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Difference between revisions of "TSS:Hg 109097.1"

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Line 9: Line 9:
 
|SE2-5LT1=
 
|SE2-5LT1=
 
|SE2-5T2=
 
|SE2-5T2=
−
|all_trans=ENST00000545260.5:0 ENST00000545693.5:0 ENST00000374789.7:0 ENST00000374788.7:0 ENST00000346874.8:0 ENST00000374794.7:0 ENST00000350537.8:0 ENST00000374790.7:0 ENST00000374776.5:0 ENST00000340077.9:0 ENST00000374773.5:0 NM_001184791:0 NM_001184789:0 NM_001184788:0 NM_001184787:0 NM_001184786:0 NM_001184785:0 NM_001184790:0 NM_019619:0 NM_001184794:0 NM_001184792:0 NM_001184793:0 uc010qep.2:0 uc010qem.2:0 uc010qel.3:0 uc010qen.3:0 uc010qek.3:0 uc010qej.3:0 uc057srn.1:0 uc010qeq.3:0 uc001ixq.3:0 uc001ixr.2:0 uc057srq.1:0 AF196185:0 BC071566:0 AF196186:0 AF454058:0 AB073671:263 AF252293:263 AF332593:263 AF467002:263 AF467003:263 AF467004:263 AF467005:263 AF467006:263 AF332592:263
+
|all_trans=ENST00000545260.5:0 ENST00000545693.5:0 ENST00000374789.8:0 ENST00000374788.8:0 ENST00000346874.9:0 ENST00000374794.8:0 ENST00000350537.9:0 ENST00000374790.8:0 ENST00000374776.6:0 ENST00000340077.9:0 ENST00000374773.6:0 NM_001184786:0 NM_001184790:0 NM_001184787:0 NM_001184785:0 NM_001184789:0 NM_001184791:0 NM_001184788:0 NM_019619:0 NM_001184792:0 NM_001184794:0 NM_001184793:0 AF196185:0 BC071566:0 AF196186:0 AF454058:0 AB073671:263 AF252293:263 AF332593:263 AF467002:263 AF467003:263 AF467004:263 AF467005:263 AF467006:263 AF332592:263
 
|chr=chr10
 
|chr=chr10
 
|cpg_percent=0.13
 
|cpg_percent=0.13
 
|distance=0
 
|distance=0
−
|distance_to_tss=27
+
|distance_to_tss=-2
 
|end=34815339
 
|end=34815339
 
|end_of_center_position=34815299
 
|end_of_center_position=34815299
 
|entrez_id=56288
 
|entrez_id=56288
 
|gc_percent=0.810945
 
|gc_percent=0.810945
−
|gene_alias=ASIP
+
|gene_alias=ASIP{{!}}Baz{{!}}PAR3{{!}}PAR3alpha{{!}}PARD-3{{!}}PARD3A{{!}}PPP1R118{{!}}SE2-5L16{{!}}SE2-5LT1{{!}}SE2-5T2
 
|gene_description=par-3 family cell polarity regulator
 
|gene_description=par-3 family cell polarity regulator
 
|gene_id=56288
 
|gene_id=56288
Line 28: Line 28:
 
|hgnc_mgi_id=HGNC:16051
 
|hgnc_mgi_id=HGNC:16051
 
|nearest_ensembl=ENSG00000148498
 
|nearest_ensembl=ENSG00000148498
−
|nearest_promoter_id=NM_001184791
+
|nearest_promoter_id=NM_001184787
 
|nearest_refseq=NM_019619
 
|nearest_refseq=NM_019619
 
|nearest_unigene=Hs.131489
 
|nearest_unigene=Hs.131489
−
|num_trans=46
+
|num_trans=35
 
|species=human
 
|species=human
 
|start=34815257
 
|start=34815257
 
|start_of_center_position=34815298
 
|start_of_center_position=34815298
 
|strand=-
 
|strand=-
−
|transcript_name=ENST00000545260.5 ENST00000545693.5 ENST00000374789.7 ENST00000374788.7 ENST00000346874.8 ENST00000374794.7 ENST00000350537.8 ENST00000374790.7 ENST00000374776.5 ENST00000340077.9 ENST00000374773.5 NM_001184791 NM_001184789 NM_001184788 NM_001184787 NM_001184786 NM_001184785 NM_001184790 NM_019619 NM_001184794 NM_001184792 NM_001184793 uc010qep.2 uc010qem.2 uc010qel.3 uc010qen.3 uc010qek.3 uc010qej.3 uc057srn.1 uc010qeq.3 uc001ixq.3 uc001ixr.2 uc057srq.1 AF196185 BC071566 AF196186 AF454058
+
|transcript_name=ENST00000545260.5 ENST00000545693.5 ENST00000374789.8 ENST00000374788.8 ENST00000346874.9 ENST00000374794.8 ENST00000350537.9 ENST00000374790.8 ENST00000374776.6 ENST00000340077.9 ENST00000374773.6 NM_001184786 NM_001184790 NM_001184787 NM_001184785 NM_001184789 NM_001184791 NM_001184788 NM_019619 NM_001184792 NM_001184794 NM_001184793 AF196185 BC071566 AF196186 AF454058
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_109097.1
 
|tss_id=hg_109097.1

Revision as of 19:39, 15 June 2021

Basic information about the TSS

TSS ID:hg_109097.1
Species:human
Chr:chr10
TSS Classification:yes
Start:34815257
End:34815339
Strand:-
TSS Score:1
Start of the center position in the TSS region:34815298
End of the center position in the TSS region:34815299



Gene and protein annotation

Transcript_name:ENST00000545260.5 ENST00000545693.5 ENST00000374789.8 ENST00000374788.8 ENST00000346874.9 ENST00000374794.8 ENST00000350537.9 ENST00000374790.8 ENST00000374776.6 ENST00000340077.9 ENST00000374773.6 NM_001184786 NM_001184790 NM_001184787 NM_001184785 NM_001184789 NM_001184791 NM_001184788 NM_019619 NM_001184792 NM_001184794 NM_001184793 AF196185 BC071566 AF196186 AF454058
Distance:0
GeneID:56288
HGNC/MGI_ID:HGNC:16051
UniProt_ID:Q5VWU8 Q5VWV2 Q8IX27 Q8TEW0
Gene_name:par-3 family cell polarity regulator
Gene_symbol:PARD3
Gene_synonyms:ASIP Baz Bazooka PAR3 PARD3A PPP1R118
Gene_source:HGNC:16051



Transcript annotation

Transcript_name:ENST00000545260.5 ENST00000545693.5 ENST00000374789.8 ENST00000374788.8 ENST00000346874.9 ENST00000374794.8 ENST00000350537.9 ENST00000374790.8 ENST00000374776.6 ENST00000340077.9 ENST00000374773.6 NM_001184786 NM_001184790 NM_001184787 NM_001184785 NM_001184789 NM_001184791 NM_001184788 NM_019619 NM_001184792 NM_001184794 NM_001184793 AF196185 BC071566 AF196186 AF454058
Distance:0
Num_trans:35
All_trans:ENST00000545260.5:0 ENST00000545693.5:0 ENST00000374789.8:0 ENST00000374788.8:0 ENST00000346874.9:0 ENST00000374794.8:0 ENST00000350537.9:0 ENST00000374790.8:0 ENST00000374776.6:0 ENST00000340077.9:0 ENST00000374773.6:0 NM_001184786:0 NM_001184790:0 NM_001184787:0 NM_001184785:0 NM_001184789:0 NM_001184791:0 NM_001184788:0 NM_019619:0 NM_001184792:0 NM_001184794:0 NM_001184793:0 AF196185:0 BC071566:0 AF196186:0 AF454058:0 AB073671:263 AF252293:263 AF332593:263 AF467002:263 AF467003:263 AF467004:263 AF467005:263 AF467006:263 AF332592:263



TATA-Box annotation

Distance to TSS:-2
Nearest PromoterID:NM_001184787
Entrez ID:56288
Nearest Unigene:Hs.131489
Nearest Refseq:NM_019619
Nearest Ensembl:ENSG00000148498
Gene Name:par-3 family cell polarity regulator
Gene Alias:ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2
Gene Description:par-3 family cell polarity regulator
Gene Type:protein-coding
CpG%:0.13
GC%:0.810945
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):
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