Difference between revisions of "TSS:Hg 232258.1"
From referenceTSS
| Line 9: | Line 9: | ||
|SE2-5LT1= | |SE2-5LT1= | ||
|SE2-5T2= | |SE2-5T2= | ||
| − | |all_trans= | + | |all_trans=ENST00000489321.5:46 ENST00000427847.6:79 ENST00000374728.7:79 NM_183060:79 ENST00000345491.7:82 BC041810:82 ENST00000487132.5:99 NM_181571:-151 ENST00000354759.7:-216 D14825:-216 ENST00000496019.5:-222 ENST00000460270.5:-261 ENST00000469949.6:-276 ENST00000429130.7:-287 ENST00000495960.5:-315 ENST00000482633.5:-330 NM_001267563:-377 NM_001267562:-377 NM_001352467:-377 NM_001352466:-377 NM_001352465:-377 NM_183013:-377 ENST00000466251.5:-389 BC017117:-401 ENST00000490460.5:-419 ENST00000461968.5:-430 ENST00000374726.7:-455 BC066342:-455 ENST00000489388.5:-472 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=46 |
| − | |distance_to_tss= | + | |distance_to_tss=388545 |
|end=34426751 | |end=34426751 | ||
|end_of_center_position=35127378 | |end_of_center_position=35127378 | ||
|entrez_id=56288 | |entrez_id=56288 | ||
|gc_percent=0.442786 | |gc_percent=0.442786 | ||
| − | |gene_alias=ASIP | + | |gene_alias=ASIP{{!}}Baz{{!}}PAR3{{!}}PAR3alpha{{!}}PARD-3{{!}}PARD3A{{!}}PPP1R118{{!}}SE2-5L16{{!}}SE2-5LT1{{!}}SE2-5T2 |
|gene_description=par-3 family cell polarity regulator | |gene_description=par-3 family cell polarity regulator | ||
| − | |gene_id= | + | |gene_id=1390 |
| − | |gene_name= | + | |gene_name=cAMP responsive element modulator |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:2352 |
| − | |gene_symbol= | + | |gene_symbol=CREM |
| − | |gene_synonyms= | + | |gene_synonyms=hCREM-2 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:2352 |
|nearest_ensembl=ENSG00000148498 | |nearest_ensembl=ENSG00000148498 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001184785 |
|nearest_refseq=NM_019619 | |nearest_refseq=NM_019619 | ||
|nearest_unigene=Hs.131489 | |nearest_unigene=Hs.131489 | ||
| − | |num_trans= | + | |num_trans=29 |
|species=human | |species=human | ||
|start=34426750 | |start=34426750 | ||
|start_of_center_position=35127377 | |start_of_center_position=35127377 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000489321.5 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_232258.1 | |tss_id=hg_232258.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q03060 |
}} | }} | ||
Revision as of 12:20, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 35127377 |
|---|---|
| End of the center position in the TSS region: | 35127378 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000489321.5 |
|---|---|
| Distance: | 46 |
| Num_trans: | 29 |
| All_trans: | ENST00000489321.5:46 ENST00000427847.6:79 ENST00000374728.7:79 NM_183060:79 ENST00000345491.7:82 BC041810:82 ENST00000487132.5:99 NM_181571:-151 ENST00000354759.7:-216 D14825:-216 ENST00000496019.5:-222 ENST00000460270.5:-261 ENST00000469949.6:-276 ENST00000429130.7:-287 ENST00000495960.5:-315 ENST00000482633.5:-330 NM_001267563:-377 NM_001267562:-377 NM_001352467:-377 NM_001352466:-377 NM_001352465:-377 NM_183013:-377 ENST00000466251.5:-389 BC017117:-401 ENST00000490460.5:-419 ENST00000461968.5:-430 ENST00000374726.7:-455 BC066342:-455 ENST00000489388.5:-472 |
TATA-Box annotation
| Distance to TSS: | 388545 |
|---|---|
| Nearest PromoterID: | NM_001184785 |
| Entrez ID: | 56288 |
| Nearest Unigene: | Hs.131489 |
| Nearest Refseq: | NM_019619 |
| Nearest Ensembl: | ENSG00000148498 |
| Gene Name: | cAMP responsive element modulator |
| Gene Alias: | ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 |
| Gene Description: | par-3 family cell polarity regulator |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.442786 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
