Difference between revisions of "TSS:Hg 104682.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|ICER= | |ICER= | ||
| − | |all_trans=ENST00000474931.5:0 ENST00000468236.5:0 ENST00000344351.5:0 NM_001267570:0 NM_182724:0 NM_182723 | + | |all_trans=ENST00000474931.5:0 ENST00000468236.5:0 ENST00000344351.5:0 NM_182721:0 NM_001267570:0 NM_182724:0 NM_182723:0 AK289379:0 AK291566:0 ENST00000488741.5:-12 NM_001352445:-27 NM_001352446:-27 ENST00000490511.1:35 ENST00000469517.1:425 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| Line 10: | Line 10: | ||
|entrez_id=1390 | |entrez_id=1390 | ||
|gc_percent=0.427861 | |gc_percent=0.427861 | ||
| − | |gene_alias=CREM-2 | + | |gene_alias=CREM-2{{!}}ICER{{!}}hCREM-2 |
|gene_description=cAMP responsive element modulator | |gene_description=cAMP responsive element modulator | ||
|gene_id=1390 | |gene_id=1390 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=HGNC:2352 | |hgnc_mgi_id=HGNC:2352 | ||
|nearest_ensembl=ENSG00000095794 | |nearest_ensembl=ENSG00000095794 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_182724 |
|nearest_refseq=NM_001881 | |nearest_refseq=NM_001881 | ||
|nearest_unigene=Hs.200250 | |nearest_unigene=Hs.200250 | ||
| − | |num_trans= | + | |num_trans=14 |
|species=human | |species=human | ||
|start=35195876 | |start=35195876 | ||
|start_of_center_position=35195925 | |start_of_center_position=35195925 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=38(CCTTTTAGACTG,+,0.00) |
| − | |transcript_name=ENST00000474931.5 ENST00000468236.5 ENST00000344351.5 NM_001267570 NM_182724 NM_182723 | + | |transcript_name=ENST00000474931.5 ENST00000468236.5 ENST00000344351.5 NM_182721 NM_001267570 NM_182724 NM_182723 AK289379 AK291566 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_104682.1 | |tss_id=hg_104682.1 | ||
Revision as of 17:56, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 35195925 |
|---|---|
| End of the center position in the TSS region: | 35195926 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000474931.5 ENST00000468236.5 ENST00000344351.5 NM_182721 NM_001267570 NM_182724 NM_182723 AK289379 AK291566 |
|---|---|
| Distance: | 0 |
| Num_trans: | 14 |
| All_trans: | ENST00000474931.5:0 ENST00000468236.5:0 ENST00000344351.5:0 NM_182721:0 NM_001267570:0 NM_182724:0 NM_182723:0 AK289379:0 AK291566:0 ENST00000488741.5:-12 NM_001352445:-27 NM_001352446:-27 ENST00000490511.1:35 ENST00000469517.1:425 |
TATA-Box annotation
| Distance to TSS: | 23 |
|---|---|
| Nearest PromoterID: | NM_182724 |
| Entrez ID: | 1390 |
| Nearest Unigene: | Hs.200250 |
| Nearest Refseq: | NM_001881 |
| Nearest Ensembl: | ENSG00000095794 |
| Gene Name: | cAMP responsive element modulator |
| Gene Alias: | CREM-2|ICER|hCREM-2 |
| Gene Description: | cAMP responsive element modulator |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.427861 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 38(CCTTTTAGACTG,+,0.00) |
