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Difference between revisions of "Template:PeakPage"

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Line 14: Line 14:
 
font-size: 16px;
 
font-size: 16px;
 
font-style:;
 
font-style:;
 +
}
 +
.item_label {
 +
    text-align:left;
 +
    width:60px;
 
}
 
}
 
</style>
 
</style>
Line 22: Line 26:
 
<div style="width:42%; float:left;">
 
<div style="width:42%; float:left;">
 
<table>
 
<table>
<tr><th scope="row" style="text-align:left;width:60px">PeakID:</th><td>[[peak_id::{{{peak_id}}}]]</td></tr>
+
<tr><th scope="row" class="item_label">PeakID:</th><td>[[peak_id::{{{peak_id}}}]]</td></tr>
<tr><th scope="row" style="text-align:left;width:60px">[[Property:species|Species]]:</th><td>[[species::{{{species}}}]]</td></tr>
+
<tr><th scope="row" class="item_label">[[Property:species|Species]]:</th><td>[[species::{{{species}}}]]</td></tr>
<tr><th scope="row" style="text-align:left;width:60px">Chr:</th><td>[[chr::{{{chr}}}]]</td></tr>
+
<tr><th scope="row" class="item_label">Chr:</th><td>[[chr::{{{chr}}}]]</td></tr>
 
</table>
 
</table>
 
</div>
 
</div>
 
<div style="width:42%; float:right;">
 
<div style="width:42%; float:right;">
 
<table>
 
<table>
<tr><th scope="row" style="text-align:left;width:60px">Start:</th><td>[[start::{{{start}}}]]</td></tr>
+
<tr><th scope="row" class="item_label">Start:</th><td>[[start::{{{start}}}]]</td></tr>
<tr><th scope="row" style="text-align:left;width:60px">End:</th><td>[[end::{{{end}}}]]</td></tr>
+
<tr><th scope="row" class="item_label">End:</th><td>[[end::{{{end}}}]]</td></tr>
<tr><th scope="row" style="text-align:left;width:60px">Strand:</th><td>[[strand::{{{strand}}}]]</td></tr>
+
<tr><th scope="row" class="item_label">Strand:</th><td>[[strand::{{{strand}}}]]</td></tr>
 
</table>
 
</table>
 
</div></td></tr>
 
</div></td></tr>
Line 39: Line 43:
 
<span class="section_head">TATA-Box annotation</span>
 
<span class="section_head">TATA-Box annotation</span>
 
<hr width="500px" size="2" noshade>
 
<hr width="500px" size="2" noshade>
<table border="0" >
+
<table border="0" ><tr><td>
<tr><th scope="row" align="left">Peak Score:</th><td>[[peak_score::{{{peak_score}}}]]</td></tr>
+
<div style="width:42%; float:left;">
<tr><th scope="row" align="left">Distance to TSS:</th><td>[[distance_to_tss::{{{distance_to_tss}}}]]</td></tr>
+
<table>
<tr><th scope="row" align="left">Nearest PromoterID:</th><td>[[nearest_promoter_id::{{{nearest_promoter_id}}}]]</td></tr>
+
<tr><th scope="row" class="item_label">Peak Score:</th><td>[[peak_score::{{{peak_score}}}]]</td></tr>
<tr><th scope="row" align="left">Entrez ID:</th><td>[[entrez_id::{{{entrez_id}}}]]</td></tr>
+
<tr><th scope="row" class="item_label">Distance to TSS:</th><td>[[distance_to_tss::{{{distance_to_tss}}}]]</td></tr>
<tr><th scope="row" align="left">Nearest Unigene:</th><td>[[nearest_unigene::{{{nearest_unigene}}}]]</td></tr>
+
<tr><th scope="row" class="item_label">Nearest PromoterID:</th><td>[[nearest_promoter_id::{{{nearest_promoter_id}}}]]</td></tr>
<tr><th scope="row" align="left">Nearest Refseq:</th><td>[[nearest_refseq::{{{nearest_refseq}}}]]</td></tr>
+
<tr><th scope="row" class="item_label">Entrez ID:</th><td>[[entrez_id::{{{entrez_id}}}]]</td></tr>
<tr><th scope="row" align="left">Nearest Ensembl:</th><td>[[nearest_ensembl::{{{nearest_ensembl}}}]]</td></tr>
+
<tr><th scope="row" class="item_label">Nearest Unigene:</th><td>[[nearest_unigene::{{{nearest_unigene}}}]]</td></tr>
<tr><th scope="row" align="left">Gene Name:</th><td>[[gene_name::{{{gene_name}}}]]</td></tr>
+
<tr><th scope="row" class="item_label">Nearest Refseq:</th><td>[[nearest_refseq::{{{nearest_refseq}}}]]</td></tr>
<tr><th scope="row" align="left">Gene Alias:</th><td>[[gene_alias::{{{gene_alias}}}]]</td></tr>
+
<tr><th scope="row" class="item_label">Nearest Ensembl:</th><td>[[nearest_ensembl::{{{nearest_ensembl}}}]]</td></tr>
<tr><th scope="row" align="left">Gene Description:</th><td>[[gene_description::{{{gene_description}}}]]</td></tr>
+
</table>
<tr><th scope="row" align="left">Gene Type:</th><td>[[gene_type::{{{gene_type}}}]]</td></tr>
+
</div>
<tr><th scope="row" align="left">CpG%:</th><td>[[cpg_percent::{{{cpg_percent}}}]]</td></tr>
+
<div style="width:42%; float:right;">
<tr><th scope="row" align="left">GC%:</th><td>[[gc_percent::{{{gc_percent}}}]]</td></tr>
+
<table>
<tr><th scope="row" align="left">TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):</th><td>[[tata_box::{{{tata_box}}}]]</td></tr>
+
<tr><th scope="row" class="item_label">Gene Name:</th><td>[[gene_name::{{{gene_name}}}]]</td></tr>
 +
<tr><th scope="row" class="item_label">Gene Alias:</th><td>[[gene_alias::{{{gene_alias}}}]]</td></tr>
 +
<tr><th scope="row" class="item_label">Gene Description:</th><td>[[gene_description::{{{gene_description}}}]]</td></tr>
 +
<tr><th scope="row" class="item_label">Gene Type:</th><td>[[gene_type::{{{gene_type}}}]]</td></tr>
 +
<tr><th scope="row" class="item_label">CpG%:</th><td>[[cpg_percent::{{{cpg_percent}}}]]</td></tr>
 +
<tr><th scope="row" class="item_label">GC%:</th><td>[[gc_percent::{{{gc_percent}}}]]</td></tr>
 +
<tr><th scope="row" class="item_label">TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):</th><td>[[tata_box::{{{tata_box}}}]]</td></tr>
 +
</table>
 +
</div></td></tr>
 
</table>
 
</table>
 
<br/>
 
<br/>

Revision as of 17:25, 7 February 2018



Basic information about the peak


PeakID:{{{peak_id}}}
Species:{{{species}}}
Chr:{{{chr}}}
Start:{{{start}}}
End:{{{end}}}
Strand:{{{strand}}}



TATA-Box annotation


Peak Score:{{{peak_score}}}
Distance to TSS:{{{distance_to_tss}}}
Nearest PromoterID:{{{nearest_promoter_id}}}
Entrez ID:{{{entrez_id}}}
Nearest Unigene:{{{nearest_unigene}}}
Nearest Refseq:{{{nearest_refseq}}}
Nearest Ensembl:{{{nearest_ensembl}}}
Gene Name:{{{gene_name}}}
Gene Alias:{{{gene_alias}}}
Gene Description:{{{gene_description}}}
Gene Type:{{{gene_type}}}
CpG%:{{{cpg_percent}}}
GC%:{{{gc_percent}}}
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):{{{tata_box}}}



Transcript annotation


Transcript_name:{{{transcript_name}}}
Distance:{{{distance}}}
Num_trans:{{{num_trans}}}
All_trans:{{{all_trans}}}



Gene and protein annotation


Transcript_name:{{{transcript_name}}}
Distance:{{{distance}}}
GeneID:{{{gene_id}}}
HGNC/MGI_ID:{{{hgnc_mgi_id}}}
UniProt_ID:{{{uniprot_id}}}
Gene_name:{{{gene_name}}}
Gene_symbol:{{{gene_symbol}}}
Gene_synonyms:{{{gene_synonyms}}}
Gene_source:{{{gene_source}}}



TSS classification


Chr:{{{chr}}}
Start:{{{start}}}
End:{{{end}}}
Strand:{{{strand}}}