Difference between revisions of "Template:PeakPage"
From referenceTSS
Line 14: | Line 14: | ||
font-size: 16px; | font-size: 16px; | ||
font-style:; | font-style:; | ||
+ | } | ||
+ | .item_label { | ||
+ | text-align:left; | ||
+ | width:60px; | ||
} | } | ||
</style> | </style> | ||
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<div style="width:42%; float:left;"> | <div style="width:42%; float:left;"> | ||
<table> | <table> | ||
− | <tr><th scope="row" | + | <tr><th scope="row" class="item_label">PeakID:</th><td>[[peak_id::{{{peak_id}}}]]</td></tr> |
− | <tr><th scope="row" | + | <tr><th scope="row" class="item_label">[[Property:species|Species]]:</th><td>[[species::{{{species}}}]]</td></tr> |
− | <tr><th scope="row" | + | <tr><th scope="row" class="item_label">Chr:</th><td>[[chr::{{{chr}}}]]</td></tr> |
</table> | </table> | ||
</div> | </div> | ||
<div style="width:42%; float:right;"> | <div style="width:42%; float:right;"> | ||
<table> | <table> | ||
− | <tr><th scope="row" | + | <tr><th scope="row" class="item_label">Start:</th><td>[[start::{{{start}}}]]</td></tr> |
− | <tr><th scope="row" | + | <tr><th scope="row" class="item_label">End:</th><td>[[end::{{{end}}}]]</td></tr> |
− | <tr><th scope="row" | + | <tr><th scope="row" class="item_label">Strand:</th><td>[[strand::{{{strand}}}]]</td></tr> |
</table> | </table> | ||
</div></td></tr> | </div></td></tr> | ||
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<span class="section_head">TATA-Box annotation</span> | <span class="section_head">TATA-Box annotation</span> | ||
<hr width="500px" size="2" noshade> | <hr width="500px" size="2" noshade> | ||
− | <table border="0" > | + | <table border="0" ><tr><td> |
− | <tr><th scope="row" | + | <div style="width:42%; float:left;"> |
− | <tr><th scope="row" | + | <table> |
− | <tr><th scope="row" | + | <tr><th scope="row" class="item_label">Peak Score:</th><td>[[peak_score::{{{peak_score}}}]]</td></tr> |
− | <tr><th scope="row" | + | <tr><th scope="row" class="item_label">Distance to TSS:</th><td>[[distance_to_tss::{{{distance_to_tss}}}]]</td></tr> |
− | <tr><th scope="row" | + | <tr><th scope="row" class="item_label">Nearest PromoterID:</th><td>[[nearest_promoter_id::{{{nearest_promoter_id}}}]]</td></tr> |
− | <tr><th scope="row" | + | <tr><th scope="row" class="item_label">Entrez ID:</th><td>[[entrez_id::{{{entrez_id}}}]]</td></tr> |
− | <tr><th scope="row" | + | <tr><th scope="row" class="item_label">Nearest Unigene:</th><td>[[nearest_unigene::{{{nearest_unigene}}}]]</td></tr> |
− | <tr><th scope="row" | + | <tr><th scope="row" class="item_label">Nearest Refseq:</th><td>[[nearest_refseq::{{{nearest_refseq}}}]]</td></tr> |
− | <tr><th scope="row" | + | <tr><th scope="row" class="item_label">Nearest Ensembl:</th><td>[[nearest_ensembl::{{{nearest_ensembl}}}]]</td></tr> |
− | <tr><th scope="row" | + | </table> |
− | <tr><th scope="row" | + | </div> |
− | <tr><th scope="row" | + | <div style="width:42%; float:right;"> |
− | <tr><th scope="row" | + | <table> |
− | <tr><th scope="row" | + | <tr><th scope="row" class="item_label">Gene Name:</th><td>[[gene_name::{{{gene_name}}}]]</td></tr> |
+ | <tr><th scope="row" class="item_label">Gene Alias:</th><td>[[gene_alias::{{{gene_alias}}}]]</td></tr> | ||
+ | <tr><th scope="row" class="item_label">Gene Description:</th><td>[[gene_description::{{{gene_description}}}]]</td></tr> | ||
+ | <tr><th scope="row" class="item_label">Gene Type:</th><td>[[gene_type::{{{gene_type}}}]]</td></tr> | ||
+ | <tr><th scope="row" class="item_label">CpG%:</th><td>[[cpg_percent::{{{cpg_percent}}}]]</td></tr> | ||
+ | <tr><th scope="row" class="item_label">GC%:</th><td>[[gc_percent::{{{gc_percent}}}]]</td></tr> | ||
+ | <tr><th scope="row" class="item_label">TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):</th><td>[[tata_box::{{{tata_box}}}]]</td></tr> | ||
+ | </table> | ||
+ | </div></td></tr> | ||
</table> | </table> | ||
<br/> | <br/> |
Revision as of 17:25, 7 February 2018
Basic information about the peak
|
TATA-Box annotation
|
Transcript annotation
Transcript_name: | {{{transcript_name}}} |
---|---|
Distance: | {{{distance}}} |
Num_trans: | {{{num_trans}}} |
All_trans: | {{{all_trans}}} |
Gene and protein annotation
Transcript_name: | {{{transcript_name}}} |
---|---|
Distance: | {{{distance}}} |
GeneID: | {{{gene_id}}} |
HGNC/MGI_ID: | {{{hgnc_mgi_id}}} |
UniProt_ID: | {{{uniprot_id}}} |
Gene_name: | {{{gene_name}}} |
Gene_symbol: | {{{gene_symbol}}} |
Gene_synonyms: | {{{gene_synonyms}}} |
Gene_source: | {{{gene_source}}} |
TSS classification
Chr: | {{{chr}}} |
---|---|
Start: | {{{start}}} |
End: | {{{end}}} |
Strand: | {{{strand}}} |