Difference between revisions of "TSS:Hg 104688.1"
From referenceTSS
| Line 3: | Line 3: | ||
|CCNX= | |CCNX= | ||
|CFP1= | |CFP1= | ||
| − | |all_trans= | + | |all_trans=ENST00000265375.13:144 ENST00000339497.7:144 NM_001282853:144 NM_001282852:144 AF413522:144 AY504868:144 LF385229:144 MA620806:144 AK314666:-176 ENST00000374704.8:-194 NM_001282854:-194 NM_145012:-194 AK303283:290 AL834355:297 BC094815:310 BC069224:318 ENST00000492478.5:322 BC050310:322 AF465728:323 AF465729:323 AB462996:324 AM392857:324 LF342612:328 MA578189:328 LF342611:426 MA578188:426 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.18 | |cpg_percent=0.18 | ||
| Line 12: | Line 12: | ||
|entrez_id=219771 | |entrez_id=219771 | ||
|gc_percent=0.800995 | |gc_percent=0.800995 | ||
| − | |gene_alias=C10orf9 | + | |gene_alias=C10orf9{{!}}CBCP1{{!}}CCNX{{!}}CFP1 |
|gene_description=cyclin Y | |gene_description=cyclin Y | ||
|gene_id=219771 | |gene_id=219771 | ||
| Line 22: | Line 22: | ||
|hgnc_mgi_id=HGNC:23354 | |hgnc_mgi_id=HGNC:23354 | ||
|nearest_ensembl=ENSG00000108100 | |nearest_ensembl=ENSG00000108100 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001282853 |
|nearest_refseq=NM_145012 | |nearest_refseq=NM_145012 | ||
|nearest_unigene=Hs.14745 | |nearest_unigene=Hs.14745 | ||
| − | |num_trans= | + | |num_trans=26 |
|species=human | |species=human | ||
|start=35336702 | |start=35336702 | ||
|start_of_center_position=35336716 | |start_of_center_position=35336716 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000265375.13 ENST00000339497.7 NM_001282853 NM_001282852 AF413522 AY504868 LF385229 MA620806 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_104688.1 | |tss_id=hg_104688.1 | ||
Revision as of 17:56, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 35336716 |
|---|---|
| End of the center position in the TSS region: | 35336717 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000265375.13 ENST00000339497.7 NM_001282853 NM_001282852 AF413522 AY504868 LF385229 MA620806 |
|---|---|
| Distance: | 144 |
| Num_trans: | 26 |
| All_trans: | ENST00000265375.13:144 ENST00000339497.7:144 NM_001282853:144 NM_001282852:144 AF413522:144 AY504868:144 LF385229:144 MA620806:144 AK314666:-176 ENST00000374704.8:-194 NM_001282854:-194 NM_145012:-194 AK303283:290 AL834355:297 BC094815:310 BC069224:318 ENST00000492478.5:322 BC050310:322 AF465728:323 AF465729:323 AB462996:324 AM392857:324 LF342612:328 MA578189:328 LF342611:426 MA578188:426 |
TATA-Box annotation
| Distance to TSS: | -158 |
|---|---|
| Nearest PromoterID: | NM_001282853 |
| Entrez ID: | 219771 |
| Nearest Unigene: | Hs.14745 |
| Nearest Refseq: | NM_145012 |
| Nearest Ensembl: | ENSG00000108100 |
| Gene Name: | cyclin Y |
| Gene Alias: | C10orf9|CBCP1|CCNX|CFP1 |
| Gene Description: | cyclin Y |
| Gene Type: | protein-coding |
| CpG%: | 0.18 |
| GC%: | 0.800995 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
