Difference between revisions of "TSS:Hg 104748.1"
From referenceTSS
| Line 4: | Line 4: | ||
|GALNACT2= | |GALNACT2= | ||
|PRO0082= | |PRO0082= | ||
| − | |all_trans=AK125300:0 AB079252:-1 AF086458:9 BX640967:-17 | + | |all_trans=AK125300:0 AB079252:-1 AF086458:9 BX640967:-17 AB090811:-37 BC030268:-37 ENST00000374466.4:-78 NM_018590:-78 NR_135077:-78 |
|beta4GalNAcT= | |beta4GalNAcT= | ||
|chr=chr10 | |chr=chr10 | ||
| Line 14: | Line 14: | ||
|entrez_id=55454 | |entrez_id=55454 | ||
|gc_percent=0.830846 | |gc_percent=0.830846 | ||
| − | |gene_alias=CHGN2 | + | |gene_alias=CHGN2{{!}}ChGn-2{{!}}GALNACT-2{{!}}GALNACT2{{!}}PRO0082{{!}}beta4GalNAcT |
|gene_description=chondroitin sulfate N-acetylgalactosaminyltransferase 2 | |gene_description=chondroitin sulfate N-acetylgalactosaminyltransferase 2 | ||
|gene_id=55454 | |gene_id=55454 | ||
| Line 24: | Line 24: | ||
|hgnc_mgi_id=HGNC:24292 | |hgnc_mgi_id=HGNC:24292 | ||
|nearest_ensembl=ENSG00000169826 | |nearest_ensembl=ENSG00000169826 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_135077 |
|nearest_refseq=NM_018590 | |nearest_refseq=NM_018590 | ||
|nearest_unigene=Hs.657569 | |nearest_unigene=Hs.657569 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=human | |species=human | ||
|start=43138522 | |start=43138522 | ||
Revision as of 17:57, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 43138530 |
|---|---|
| End of the center position in the TSS region: | 43138531 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK125300 |
|---|---|
| Distance: | 0 |
| Num_trans: | 9 |
| All_trans: | AK125300:0 AB079252:-1 AF086458:9 BX640967:-17 AB090811:-37 BC030268:-37 ENST00000374466.4:-78 NM_018590:-78 NR_135077:-78 |
TATA-Box annotation
| Distance to TSS: | 85 |
|---|---|
| Nearest PromoterID: | NR_135077 |
| Entrez ID: | 55454 |
| Nearest Unigene: | Hs.657569 |
| Nearest Refseq: | NM_018590 |
| Nearest Ensembl: | ENSG00000169826 |
| Gene Name: | chondroitin sulfate N-acetylgalactosaminyltransferase 2 |
| Gene Alias: | CHGN2|ChGn-2|GALNACT-2|GALNACT2|PRO0082|beta4GalNAcT |
| Gene Description: | chondroitin sulfate N-acetylgalactosaminyltransferase 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.18 |
| GC%: | 0.830846 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
