Difference between revisions of "TSS:Hg 104767.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=ENST00000669972.1:23 NR_033923:-72 BC017939:-72 ENST00000667243.1:-117 ENST00000649239.1:-117 ENST00000652937.1:142 ENST00000661424.1:-173 ENST00000374432.4:-176 ENST00000664505.1:-182 ENST00000666387.1:-189 |
|bA168P8.1= | |bA168P8.1= | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| − | |distance= | + | |distance=23 |
|distance_to_tss=74 | |distance_to_tss=74 | ||
|end=43845383 | |end=43845383 | ||
| Line 10: | Line 10: | ||
|entrez_id=414260 | |entrez_id=414260 | ||
|gc_percent=0.631841 | |gc_percent=0.631841 | ||
| − | |gene_alias=C10orf136 | + | |gene_alias=C10orf136{{!}}bA168P8.1 |
|gene_description=long intergenic non-protein coding RNA 619 | |gene_description=long intergenic non-protein coding RNA 619 | ||
| − | |gene_id= | + | |gene_id=100506835 |
| − | |gene_name=long intergenic non-protein coding RNA | + | |gene_name=long intergenic non-protein coding RNA 840 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:44987 |
| − | |gene_symbol= | + | |gene_symbol=LINC00840 |
| − | |gene_synonyms= | + | |gene_synonyms= |
|gene_type=ncRNA | |gene_type=ncRNA | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:44987 |
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000226808 |
|nearest_promoter_id=NR_033923 | |nearest_promoter_id=NR_033923 | ||
|nearest_refseq=NR_033923 | |nearest_refseq=NR_033923 | ||
|nearest_unigene=Hs.351856 | |nearest_unigene=Hs.351856 | ||
| − | |num_trans= | + | |num_trans=10 |
|species=human | |species=human | ||
|start=43845377 | |start=43845377 | ||
|start_of_center_position=43845380 | |start_of_center_position=43845380 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000669972.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_104767.1 | |tss_id=hg_104767.1 | ||
Revision as of 17:58, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 43845380 |
|---|---|
| End of the center position in the TSS region: | 43845381 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000669972.1 |
|---|---|
| Distance: | 23 |
| Num_trans: | 10 |
| All_trans: | ENST00000669972.1:23 NR_033923:-72 BC017939:-72 ENST00000667243.1:-117 ENST00000649239.1:-117 ENST00000652937.1:142 ENST00000661424.1:-173 ENST00000374432.4:-176 ENST00000664505.1:-182 ENST00000666387.1:-189 |
TATA-Box annotation
| Distance to TSS: | 74 |
|---|---|
| Nearest PromoterID: | NR_033923 |
| Entrez ID: | 414260 |
| Nearest Unigene: | Hs.351856 |
| Nearest Refseq: | NR_033923 |
| Nearest Ensembl: | ENSG00000226808 |
| Gene Name: | long intergenic non-protein coding RNA 840 |
| Gene Alias: | C10orf136|bA168P8.1 |
| Gene Description: | long intergenic non-protein coding RNA 619 |
| Gene Type: | ncRNA |
| CpG%: | 0.02 |
| GC%: | 0.631841 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
