Difference between revisions of "TSS:Hg 104788.1"
From referenceTSS
| Line 3: | Line 3: | ||
|5LPG= | |5LPG= | ||
|LOG5= | |LOG5= | ||
| − | |all_trans=ENST00000374391. | + | |all_trans=ENST00000374391.7:0 NM_000698:0 NM_001320861:0 NM_001320862:0 NM_001256153:0 AK225603:0 BC130332:0 BC132677:0 BC143985:0 BC143986:0 AK315223:0 BC034464:0 BC040450:5 J03600:6 J03571:17 AB208946:-24 ENST00000542434.5:-29 NM_001256154:-39 AB590536:44 HQ258335:46 KJ890662:46 KR711721:46 ENST00000612635.4:48 JQ728550:48 HM592258:48 HM592259:48 HM592260:48 HM592261:48 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=2 |
|end=45374232 | |end=45374232 | ||
|end_of_center_position=45374219 | |end_of_center_position=45374219 | ||
|entrez_id=240 | |entrez_id=240 | ||
|gc_percent=0.79602 | |gc_percent=0.79602 | ||
| − | |gene_alias=5-LO | + | |gene_alias=5-LO{{!}}5-LOX{{!}}5LPG{{!}}LOG5 |
|gene_description=arachidonate 5-lipoxygenase | |gene_description=arachidonate 5-lipoxygenase | ||
|gene_id=240 | |gene_id=240 | ||
| Line 22: | Line 22: | ||
|hgnc_mgi_id=HGNC:435 | |hgnc_mgi_id=HGNC:435 | ||
|nearest_ensembl=ENSG00000012779 | |nearest_ensembl=ENSG00000012779 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001320861 |
|nearest_refseq=NM_000698 | |nearest_refseq=NM_000698 | ||
|nearest_unigene=Hs.89499 | |nearest_unigene=Hs.89499 | ||
| − | |num_trans= | + | |num_trans=28 |
|species=human | |species=human | ||
|start=45374204 | |start=45374204 | ||
|start_of_center_position=45374218 | |start_of_center_position=45374218 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000374391. | + | |transcript_name=ENST00000374391.7 NM_000698 NM_001320861 NM_001320862 NM_001256153 AK225603 BC130332 BC132677 BC143985 BC143986 AK315223 BC034464 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_104788.1 | |tss_id=hg_104788.1 | ||
Revision as of 17:58, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 45374218 |
|---|---|
| End of the center position in the TSS region: | 45374219 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000374391.7 NM_000698 NM_001320861 NM_001320862 NM_001256153 AK225603 BC130332 BC132677 BC143985 BC143986 AK315223 BC034464 |
|---|---|
| Distance: | 0 |
| Num_trans: | 28 |
| All_trans: | ENST00000374391.7:0 NM_000698:0 NM_001320861:0 NM_001320862:0 NM_001256153:0 AK225603:0 BC130332:0 BC132677:0 BC143985:0 BC143986:0 AK315223:0 BC034464:0 BC040450:5 J03600:6 J03571:17 AB208946:-24 ENST00000542434.5:-29 NM_001256154:-39 AB590536:44 HQ258335:46 KJ890662:46 KR711721:46 ENST00000612635.4:48 JQ728550:48 HM592258:48 HM592259:48 HM592260:48 HM592261:48 |
TATA-Box annotation
| Distance to TSS: | 2 |
|---|---|
| Nearest PromoterID: | NM_001320861 |
| Entrez ID: | 240 |
| Nearest Unigene: | Hs.89499 |
| Nearest Refseq: | NM_000698 |
| Nearest Ensembl: | ENSG00000012779 |
| Gene Name: | arachidonate 5-lipoxygenase |
| Gene Alias: | 5-LO|5-LOX|5LPG|LOG5 |
| Gene Description: | arachidonate 5-lipoxygenase |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.79602 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
