Difference between revisions of "TSS:Hg 104789.1"
From referenceTSS
| Line 3: | Line 3: | ||
|5LPG= | |5LPG= | ||
|LOG5= | |LOG5= | ||
| − | |all_trans=BC040450:0 J03600:0 J03571:0 | + | |all_trans=BC040450:0 J03600:0 J03571:0 BC034464:-9 AB590536:16 HQ258335:18 KJ890662:18 KR711721:18 ENST00000374391.7:-20 ENST00000612635.4:20 NM_000698:-20 NM_001320861:-20 NM_001320862:-20 NM_001256153:-20 AK315223:-20 JQ728550:20 HM592258:20 HM592259:20 HM592260:20 HM592261:20 AK225603:-23 BC130332:-23 BC132677:-23 BC143985:-23 BC143986:-23 AB208946:-55 ENST00000542434.5:-60 NM_001256154:-70 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=32 |
|end=45374260 | |end=45374260 | ||
|end_of_center_position=45374248 | |end_of_center_position=45374248 | ||
|entrez_id=240 | |entrez_id=240 | ||
|gc_percent=0.741294 | |gc_percent=0.741294 | ||
| − | |gene_alias=5-LO | + | |gene_alias=5-LO{{!}}5-LOX{{!}}5LPG{{!}}LOG5 |
|gene_description=arachidonate 5-lipoxygenase | |gene_description=arachidonate 5-lipoxygenase | ||
|gene_id=240 | |gene_id=240 | ||
| Line 22: | Line 22: | ||
|hgnc_mgi_id=HGNC:435 | |hgnc_mgi_id=HGNC:435 | ||
|nearest_ensembl=ENSG00000012779 | |nearest_ensembl=ENSG00000012779 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001320861 |
|nearest_refseq=NM_000698 | |nearest_refseq=NM_000698 | ||
|nearest_unigene=Hs.89499 | |nearest_unigene=Hs.89499 | ||
| − | |num_trans= | + | |num_trans=28 |
|species=human | |species=human | ||
|start=45374235 | |start=45374235 | ||
Revision as of 17:58, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 45374247 |
|---|---|
| End of the center position in the TSS region: | 45374248 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC040450 J03600 J03571 |
|---|---|
| Distance: | 0 |
| Num_trans: | 28 |
| All_trans: | BC040450:0 J03600:0 J03571:0 BC034464:-9 AB590536:16 HQ258335:18 KJ890662:18 KR711721:18 ENST00000374391.7:-20 ENST00000612635.4:20 NM_000698:-20 NM_001320861:-20 NM_001320862:-20 NM_001256153:-20 AK315223:-20 JQ728550:20 HM592258:20 HM592259:20 HM592260:20 HM592261:20 AK225603:-23 BC130332:-23 BC132677:-23 BC143985:-23 BC143986:-23 AB208946:-55 ENST00000542434.5:-60 NM_001256154:-70 |
TATA-Box annotation
| Distance to TSS: | 32 |
|---|---|
| Nearest PromoterID: | NM_001320861 |
| Entrez ID: | 240 |
| Nearest Unigene: | Hs.89499 |
| Nearest Refseq: | NM_000698 |
| Nearest Ensembl: | ENSG00000012779 |
| Gene Name: | arachidonate 5-lipoxygenase |
| Gene Alias: | 5-LO|5-LOX|5LPG|LOG5 |
| Gene Description: | arachidonate 5-lipoxygenase |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.741294 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
