Difference between revisions of "TSS:Hg 104790.1"
From referenceTSS
| Line 3: | Line 3: | ||
|5LPG= | |5LPG= | ||
|LOG5= | |LOG5= | ||
| − | |all_trans=ENST00000612635.4 | + | |all_trans=ENST00000612635.4:-84 JQ728550:-84 HM592258:-84 HM592259:-84 HM592260:-84 HM592261:-84 HQ258335:-86 KJ890662:-86 KR711721:-86 AB590536:-88 J03571:-115 J03600:-126 BC040450:-127 BC034464:-137 ENST00000374391.7:-148 NM_000698:-148 NM_001320861:-148 NM_001320862:-148 NM_001256153:-148 AK315223:-148 AK225603:-151 BC130332:-151 BC132677:-151 BC143985:-151 BC143986:-151 AB208946:-183 ENST00000542434.5:-188 NM_001256154:-198 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
|distance=-84 | |distance=-84 | ||
| − | |distance_to_tss= | + | |distance_to_tss=153 |
|end=45374374 | |end=45374374 | ||
|end_of_center_position=45374369 | |end_of_center_position=45374369 | ||
|entrez_id=240 | |entrez_id=240 | ||
|gc_percent=0.696517 | |gc_percent=0.696517 | ||
| − | |gene_alias=5-LO | + | |gene_alias=5-LO{{!}}5-LOX{{!}}5LPG{{!}}LOG5 |
|gene_description=arachidonate 5-lipoxygenase | |gene_description=arachidonate 5-lipoxygenase | ||
|gene_id=240 | |gene_id=240 | ||
| Line 22: | Line 22: | ||
|hgnc_mgi_id=HGNC:435 | |hgnc_mgi_id=HGNC:435 | ||
|nearest_ensembl=ENSG00000012779 | |nearest_ensembl=ENSG00000012779 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001320861 |
|nearest_refseq=NM_000698 | |nearest_refseq=NM_000698 | ||
|nearest_unigene=Hs.89499 | |nearest_unigene=Hs.89499 | ||
| − | |num_trans= | + | |num_trans=28 |
|species=human | |species=human | ||
|start=45374363 | |start=45374363 | ||
|start_of_center_position=45374368 | |start_of_center_position=45374368 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000612635.4 | + | |transcript_name=ENST00000612635.4 JQ728550 HM592258 HM592259 HM592260 HM592261 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_104790.1 | |tss_id=hg_104790.1 | ||
Revision as of 17:58, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 45374368 |
|---|---|
| End of the center position in the TSS region: | 45374369 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000612635.4 JQ728550 HM592258 HM592259 HM592260 HM592261 |
|---|---|
| Distance: | -84 |
| Num_trans: | 28 |
| All_trans: | ENST00000612635.4:-84 JQ728550:-84 HM592258:-84 HM592259:-84 HM592260:-84 HM592261:-84 HQ258335:-86 KJ890662:-86 KR711721:-86 AB590536:-88 J03571:-115 J03600:-126 BC040450:-127 BC034464:-137 ENST00000374391.7:-148 NM_000698:-148 NM_001320861:-148 NM_001320862:-148 NM_001256153:-148 AK315223:-148 AK225603:-151 BC130332:-151 BC132677:-151 BC143985:-151 BC143986:-151 AB208946:-183 ENST00000542434.5:-188 NM_001256154:-198 |
TATA-Box annotation
| Distance to TSS: | 153 |
|---|---|
| Nearest PromoterID: | NM_001320861 |
| Entrez ID: | 240 |
| Nearest Unigene: | Hs.89499 |
| Nearest Refseq: | NM_000698 |
| Nearest Ensembl: | ENSG00000012779 |
| Gene Name: | arachidonate 5-lipoxygenase |
| Gene Alias: | 5-LO|5-LOX|5LPG|LOG5 |
| Gene Description: | arachidonate 5-lipoxygenase |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.696517 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
