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Difference between revisions of "TSS:Hg 104794.1"

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Line 2: Line 2:
 
|FAM21C=
 
|FAM21C=
 
|VPEF=
 
|VPEF=
−
|all_trans=ENST00000336378.8:0 ENST00000623400.3:0 ENST00000420848.3:0 uc057szf.1:0 uc057szg.1:0 uc057szh.1:0 AK303048:0 AK293929:0 BC053887:0 ENST00000374362.6:-14 uc001jcu.4:-14 AB011164:-14 AK291430:-21 ENST00000540872.5:-33 ENST00000537517.5:-33 ENST00000359860.7:-33 NM_001169107:-33 NM_001169106:-33 NM_015262:-33 uc057sze.1:-33 uc010qfi.3:-33 uc010qfk.3:-33 AB383916:126
+
|all_trans=ENST00000540872.6:0 ENST00000537517.6:0 ENST00000336378.8:0 ENST00000623400.4:0 ENST00000420848.3:0 NM_001367413:0 NR_159966:0 NM_001367401:0 NM_001367396:0 NM_001367416:0 NM_001367407:0 NM_001367406:0 NM_001367395:0 NM_001367397:0 NM_001367412:0 NM_001367411:0 NM_001367410:0 NM_001367399:0 NM_001367409:0 NM_001367398:0 NM_001367404:0 NM_001367405:0 NM_015262:0 NM_001367400:0 NM_001367394:0 NM_001169107:0 NM_001169106:0 NM_001330074:0 NM_001367408:0 NM_001367403:0 NM_001367402:0 NM_001367415:0 NM_001367414:0 AK303048:0 AK293929:0 BC053887:0 ENST00000374362.6:-14 AB011164:-14 AK291430:-21 ENST00000359860.7:-33 AB383916:126 NM_001367393:-190
 
|chr=chr10
 
|chr=chr10
 
|cpg_percent=0.1
 
|cpg_percent=0.1
 
|distance=0
 
|distance=0
−
|distance_to_tss=61
+
|distance_to_tss=-5
 
|end=45727290
 
|end=45727290
 
|end_of_center_position=45727262
 
|end_of_center_position=45727262
 
|entrez_id=253725
 
|entrez_id=253725
 
|gc_percent=0.736318
 
|gc_percent=0.736318
−
|gene_alias=FAM21A
+
|gene_alias=FAM21A{{!}}FAM21C{{!}}VPEF
 
|gene_description=WASH complex subunit 2C
 
|gene_description=WASH complex subunit 2C
 
|gene_id=253725
 
|gene_id=253725
−
|gene_name=family with sequence similarity 21 member C
+
|gene_name=WASH complex subunit 2C
 
|gene_source=HGNC:23414
 
|gene_source=HGNC:23414
−
|gene_symbol=FAM21C
+
|gene_symbol=WASHC2C
 
|gene_synonyms=Em:AC012044.3 KIAA0592
 
|gene_synonyms=Em:AC012044.3 KIAA0592
 
|gene_type=protein-coding
 
|gene_type=protein-coding
 
|hgnc_mgi_id=HGNC:23414
 
|hgnc_mgi_id=HGNC:23414
 
|nearest_ensembl=ENSG00000172661
 
|nearest_ensembl=ENSG00000172661
−
|nearest_promoter_id=NM_001169107
+
|nearest_promoter_id=NM_001367398
 
|nearest_refseq=NM_015262
 
|nearest_refseq=NM_015262
 
|nearest_unigene=Hs.365286
 
|nearest_unigene=Hs.365286
−
|num_trans=23
+
|num_trans=42
 
|species=human
 
|species=human
 
|start=45727232
 
|start=45727232
 
|start_of_center_position=45727261
 
|start_of_center_position=45727261
 
|strand=+
 
|strand=+
−
|transcript_name=ENST00000336378.8 ENST00000623400.3 ENST00000420848.3 uc057szf.1 uc057szg.1 uc057szh.1 AK303048 AK293929 BC053887
+
|transcript_name=ENST00000540872.6 ENST00000537517.6 ENST00000336378.8 ENST00000623400.4 ENST00000420848.3 NM_001367413 NR_159966 NM_001367401 NM_001367396 NM_001367416 NM_001367407 NM_001367406 NM_001367395 NM_001367397 NM_001367412 NM_001367411 NM_001367410 NM_001367399 NM_001367409 NM_001367398 NM_001367404 NM_001367405 NM_015262 NM_001367400 NM_001367394 NM_001169107 NM_001169106 NM_001330074 NM_001367408 NM_001367403 NM_001367402 NM_001367415 NM_001367414 AK303048 AK293929 BC053887
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_104794.1
 
|tss_id=hg_104794.1
 
|tss_score=1
 
|tss_score=1
−
|uniprot_id=A0A096LPC5 A0A0A0MR88 A0A0A0MT65 B4DF48
+
|uniprot_id=A0A096LPC5 A0A0A0MR88 A0A0A0MT65 B4DF48 Q9Y4E1
 
}}
 
}}

Revision as of 17:59, 15 June 2021

Basic information about the TSS

TSS ID:hg_104794.1
Species:human
Chr:chr10
TSS Classification:yes
Start:45727232
End:45727290
Strand:+
TSS Score:1
Start of the center position in the TSS region:45727261
End of the center position in the TSS region:45727262



Gene and protein annotation

Transcript_name:ENST00000540872.6 ENST00000537517.6 ENST00000336378.8 ENST00000623400.4 ENST00000420848.3 NM_001367413 NR_159966 NM_001367401 NM_001367396 NM_001367416 NM_001367407 NM_001367406 NM_001367395 NM_001367397 NM_001367412 NM_001367411 NM_001367410 NM_001367399 NM_001367409 NM_001367398 NM_001367404 NM_001367405 NM_015262 NM_001367400 NM_001367394 NM_001169107 NM_001169106 NM_001330074 NM_001367408 NM_001367403 NM_001367402 NM_001367415 NM_001367414 AK303048 AK293929 BC053887
Distance:0
GeneID:253725
HGNC/MGI_ID:HGNC:23414
UniProt_ID:A0A096LPC5 A0A0A0MR88 A0A0A0MT65 B4DF48 Q9Y4E1
Gene_name:WASH complex subunit 2C
Gene_symbol:WASHC2C
Gene_synonyms:Em:AC012044.3 KIAA0592
Gene_source:HGNC:23414



Transcript annotation

Transcript_name:ENST00000540872.6 ENST00000537517.6 ENST00000336378.8 ENST00000623400.4 ENST00000420848.3 NM_001367413 NR_159966 NM_001367401 NM_001367396 NM_001367416 NM_001367407 NM_001367406 NM_001367395 NM_001367397 NM_001367412 NM_001367411 NM_001367410 NM_001367399 NM_001367409 NM_001367398 NM_001367404 NM_001367405 NM_015262 NM_001367400 NM_001367394 NM_001169107 NM_001169106 NM_001330074 NM_001367408 NM_001367403 NM_001367402 NM_001367415 NM_001367414 AK303048 AK293929 BC053887
Distance:0
Num_trans:42
All_trans:ENST00000540872.6:0 ENST00000537517.6:0 ENST00000336378.8:0 ENST00000623400.4:0 ENST00000420848.3:0 NM_001367413:0 NR_159966:0 NM_001367401:0 NM_001367396:0 NM_001367416:0 NM_001367407:0 NM_001367406:0 NM_001367395:0 NM_001367397:0 NM_001367412:0 NM_001367411:0 NM_001367410:0 NM_001367399:0 NM_001367409:0 NM_001367398:0 NM_001367404:0 NM_001367405:0 NM_015262:0 NM_001367400:0 NM_001367394:0 NM_001169107:0 NM_001169106:0 NM_001330074:0 NM_001367408:0 NM_001367403:0 NM_001367402:0 NM_001367415:0 NM_001367414:0 AK303048:0 AK293929:0 BC053887:0 ENST00000374362.6:-14 AB011164:-14 AK291430:-21 ENST00000359860.7:-33 AB383916:126 NM_001367393:-190



TATA-Box annotation

Distance to TSS:-5
Nearest PromoterID:NM_001367398
Entrez ID:253725
Nearest Unigene:Hs.365286
Nearest Refseq:NM_015262
Nearest Ensembl:ENSG00000172661
Gene Name:WASH complex subunit 2C
Gene Alias:FAM21A|FAM21C|VPEF
Gene Description:WASH complex subunit 2C
Gene Type:protein-coding
CpG%:0.1
GC%:0.736318
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):
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