Difference between revisions of "TSS:Hg 104817.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000512997.5 | + | |all_trans=ENST00000512997.5:8 ENST00000374321.9:52 NM_181519:52 NM_031912:52 ENST00000503753.5:57 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
|distance=8 | |distance=8 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-57 |
|end=46579076 | |end=46579076 | ||
|end_of_center_position=46579071 | |end_of_center_position=46579071 | ||
|entrez_id=83849 | |entrez_id=83849 | ||
|gc_percent=0.781095 | |gc_percent=0.781095 | ||
| − | |gene_alias=CHR10SYT | + | |gene_alias=CHR10SYT{{!}}sytXV |
|gene_description=synaptotagmin 15 | |gene_description=synaptotagmin 15 | ||
| − | |gene_id= | + | |gene_id=83849 |
|gene_name=synaptotagmin 15 | |gene_name=synaptotagmin 15 | ||
|gene_source=HGNC:17167 | |gene_source=HGNC:17167 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:17167 | |hgnc_mgi_id=HGNC:17167 | ||
|nearest_ensembl=ENSG00000204176 | |nearest_ensembl=ENSG00000204176 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_031912 |
|nearest_refseq=NM_031912 | |nearest_refseq=NM_031912 | ||
|nearest_unigene=Hs.696346 | |nearest_unigene=Hs.696346 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=human | |species=human | ||
|start=46579065 | |start=46579065 | ||
| Line 28: | Line 28: | ||
|strand=+ | |strand=+ | ||
|sytXV= | |sytXV= | ||
| − | |tata_box= | + | |tata_box=25(CGCTTTAAGAGA,-,0.00),26(GCTTTAAGAGAC,+,0.00) |
| − | |transcript_name=ENST00000512997.5 | + | |transcript_name=ENST00000512997.5 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_104817.1 | |tss_id=hg_104817.1 | ||
Revision as of 17:59, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 46579070 |
|---|---|
| End of the center position in the TSS region: | 46579071 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000512997.5 |
|---|---|
| Distance: | 8 |
| Num_trans: | 5 |
| All_trans: | ENST00000512997.5:8 ENST00000374321.9:52 NM_181519:52 NM_031912:52 ENST00000503753.5:57 |
TATA-Box annotation
| Distance to TSS: | -57 |
|---|---|
| Nearest PromoterID: | NM_031912 |
| Entrez ID: | 83849 |
| Nearest Unigene: | Hs.696346 |
| Nearest Refseq: | NM_031912 |
| Nearest Ensembl: | ENSG00000204176 |
| Gene Name: | synaptotagmin 15 |
| Gene Alias: | CHR10SYT|sytXV |
| Gene Description: | synaptotagmin 15 |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.781095 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 25(CGCTTTAAGAGA,-,0.00),26(GCTTTAAGAGAC,+,0.00) |
