Difference between revisions of "TSS:Hg 104885.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=AL833265:-25 ENST00000470615.1:37 ENST00000374144.8:-48 NM_001135196:-48 AK127811:-76 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
|distance=-25 | |distance=-25 | ||
| − | |distance_to_tss= | + | |distance_to_tss=57 |
|end=49299237 | |end=49299237 | ||
|end_of_center_position=49299228 | |end_of_center_position=49299228 | ||
|entrez_id=118461 | |entrez_id=118461 | ||
|gc_percent=0.547264 | |gc_percent=0.547264 | ||
| − | |gene_alias= | + | |gene_alias=CEFIP |
|gene_description=chromosome 10 open reading frame 71 | |gene_description=chromosome 10 open reading frame 71 | ||
|gene_id=118461 | |gene_id=118461 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_199459 | |nearest_refseq=NM_199459 | ||
|nearest_unigene=Hs.585480 | |nearest_unigene=Hs.585480 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=human | |species=human | ||
|start=49299217 | |start=49299217 | ||
|start_of_center_position=49299227 | |start_of_center_position=49299227 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=AL833265 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_104885.1 | |tss_id=hg_104885.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 18:01, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 49299227 |
|---|---|
| End of the center position in the TSS region: | 49299228 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AL833265 |
|---|---|
| Distance: | -25 |
| Num_trans: | 5 |
| All_trans: | AL833265:-25 ENST00000470615.1:37 ENST00000374144.8:-48 NM_001135196:-48 AK127811:-76 |
TATA-Box annotation
| Distance to TSS: | 57 |
|---|---|
| Nearest PromoterID: | NM_001135196 |
| Entrez ID: | 118461 |
| Nearest Unigene: | Hs.585480 |
| Nearest Refseq: | NM_199459 |
| Nearest Ensembl: | ENSG00000177354 |
| Gene Name: | chromosome 10 open reading frame 71 |
| Gene Alias: | CEFIP |
| Gene Description: | chromosome 10 open reading frame 71 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.547264 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
