Difference between revisions of "TSS:Hg 104922.1"
From referenceTSS
| Line 3: | Line 3: | ||
|PRKG1B= | |PRKG1B= | ||
|PRKGR1B= | |PRKGR1B= | ||
| − | |all_trans= | + | |all_trans=AK300110:28 D45864:201 ENST00000401604.8:-252 NM_001098512:-252 |
|cGK= | |cGK= | ||
|cGK 1= | |cGK 1= | ||
| Line 12: | Line 12: | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
| − | |distance= | + | |distance=28 |
| − | |distance_to_tss= | + | |distance_to_tss=260 |
|end=50991157 | |end=50991157 | ||
|end_of_center_position=50991149 | |end_of_center_position=50991149 | ||
|entrez_id=5592 | |entrez_id=5592 | ||
|gc_percent=0.562189 | |gc_percent=0.562189 | ||
| − | |gene_alias=AAT8 | + | |gene_alias=AAT8{{!}}PKG{{!}}PKG1{{!}}PRKG1B{{!}}PRKGR1B{{!}}cGK{{!}}cGK 1{{!}}cGK1{{!}}cGKI{{!}}cGKI-BETA{{!}}cGKI-alpha |
| − | |gene_description= | + | |gene_description=protein kinase cGMP-dependent 1 |
|gene_id=5592 | |gene_id=5592 | ||
| − | |gene_name= | + | |gene_name=protein kinase cGMP-dependent 1 |
|gene_source=HGNC:9414 | |gene_source=HGNC:9414 | ||
|gene_symbol=PRKG1 | |gene_symbol=PRKG1 | ||
| − | |gene_synonyms=PGK PKG | + | |gene_synonyms=PGK PKG PKG1 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:9414 | |hgnc_mgi_id=HGNC:9414 | ||
| Line 31: | Line 31: | ||
|nearest_refseq=NM_006258 | |nearest_refseq=NM_006258 | ||
|nearest_unigene=Hs.407535 | |nearest_unigene=Hs.407535 | ||
| − | |num_trans= | + | |num_trans=4 |
|species=human | |species=human | ||
|start=50991139 | |start=50991139 | ||
|start_of_center_position=50991148 | |start_of_center_position=50991148 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-3(GCTTTTAGACTT,+,0.00) |
| − | |transcript_name= | + | |transcript_name=AK300110 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_104922.1 | |tss_id=hg_104922.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=B4DT93 |
}} | }} | ||
Revision as of 18:01, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 50991148 |
|---|---|
| End of the center position in the TSS region: | 50991149 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK300110 |
|---|---|
| Distance: | 28 |
| Num_trans: | 4 |
| All_trans: | AK300110:28 D45864:201 ENST00000401604.8:-252 NM_001098512:-252 |
TATA-Box annotation
| Distance to TSS: | 260 |
|---|---|
| Nearest PromoterID: | NM_001098512 |
| Entrez ID: | 5592 |
| Nearest Unigene: | Hs.407535 |
| Nearest Refseq: | NM_006258 |
| Nearest Ensembl: | ENSG00000185532 |
| Gene Name: | protein kinase cGMP-dependent 1 |
| Gene Alias: | AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha |
| Gene Description: | protein kinase cGMP-dependent 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.055 |
| GC%: | 0.562189 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -3(GCTTTTAGACTT,+,0.00) |
