Difference between revisions of "TSS:Hg 109458.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000503444 | + | |all_trans=ENST00000503444.1:10 ENST00000468840.6:-55 NM_001347847:-55 NM_001347845:-55 NM_001347844:-55 NM_001347843:-55 NM_001347848:-55 NM_001143773:-55 NM_001347846:-55 AK299924:-55 ENST00000470220.5:139 ENST00000618427.4:246 ENST00000611933.4:246 NM_001001971:246 NM_001166698:246 NM_001347850:246 NM_001347851:246 NM_001347852:246 NM_001347849:246 BC064431:246 ENST00000622363.4:250 AK316542:250 ENST00000621119.4:276 BC036453:290 ENST00000618804.5:291 NM_198215:291 ENST00000614220.4:293 ENST00000619059.4:318 AK289796:320 AK294805:331 ENST00000435852.6:332 ENST00000512919.5:-333 NM_001347842:-333 NM_001347840:-333 ENST00000422313.6:380 KJ895852:380 KJ900467:380 DQ894404:380 EU176262:380 CU687880:380 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_198215 | |nearest_refseq=NM_198215 | ||
|nearest_unigene=Hs.607594 | |nearest_unigene=Hs.607594 | ||
| − | |num_trans= | + | |num_trans=40 |
|species=human | |species=human | ||
|start=59362839 | |start=59362839 | ||
|start_of_center_position=59362843 | |start_of_center_position=59362843 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000503444 | + | |transcript_name=ENST00000503444.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_109458.1 | |tss_id=hg_109458.1 | ||
Revision as of 19:47, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 59362843 |
|---|---|
| End of the center position in the TSS region: | 59362844 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000503444.1 |
|---|---|
| Distance: | 10 |
| Num_trans: | 40 |
| All_trans: | ENST00000503444.1:10 ENST00000468840.6:-55 NM_001347847:-55 NM_001347845:-55 NM_001347844:-55 NM_001347843:-55 NM_001347848:-55 NM_001143773:-55 NM_001347846:-55 AK299924:-55 ENST00000470220.5:139 ENST00000618427.4:246 ENST00000611933.4:246 NM_001001971:246 NM_001166698:246 NM_001347850:246 NM_001347851:246 NM_001347852:246 NM_001347849:246 BC064431:246 ENST00000622363.4:250 AK316542:250 ENST00000621119.4:276 BC036453:290 ENST00000618804.5:291 NM_198215:291 ENST00000614220.4:293 ENST00000619059.4:318 AK289796:320 AK294805:331 ENST00000435852.6:332 ENST00000512919.5:-333 NM_001347842:-333 NM_001347840:-333 ENST00000422313.6:380 KJ895852:380 KJ900467:380 DQ894404:380 EU176262:380 CU687880:380 |
TATA-Box annotation
| Distance to TSS: | 59 |
|---|---|
| Nearest PromoterID: | NM_001347847 |
| Entrez ID: | 220965 |
| Nearest Unigene: | Hs.607594 |
| Nearest Refseq: | NM_198215 |
| Nearest Ensembl: | ENSG00000148541 |
| Gene Name: | family with sequence similarity 13 member C |
| Gene Alias: | FAM13C1 |
| Gene Description: | family with sequence similarity 13 member C |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.60199 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
