Difference between revisions of "TSS:Hg 109460.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000468840.6:-21 NM_001143773:-21 | + | |all_trans=ENST00000468840.6:-21 NM_001347847:-21 NM_001347845:-21 NM_001347844:-21 NM_001347843:-21 NM_001347848:-21 NM_001143773:-21 NM_001347846:-21 AK299924:-21 ENST00000503444.1:38 ENST00000470220.5:167 ENST00000618427.4:274 ENST00000611933.4:274 NM_001001971:274 NM_001166698:274 NM_001347850:274 NM_001347851:274 NM_001347852:274 NM_001347849:274 BC064431:274 ENST00000622363.4:278 AK316542:278 ENST00000512919.5:-299 NM_001347842:-299 NM_001347840:-299 ENST00000621119.4:304 BC036453:318 ENST00000618804.5:319 NM_198215:319 ENST00000614220.4:321 ENST00000619059.4:346 AK289796:348 AK294805:359 ENST00000435852.6:360 ENST00000422313.6:408 KJ895852:408 KJ900467:408 DQ894404:408 EU176262:408 CU687880:408 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_198215 | |nearest_refseq=NM_198215 | ||
|nearest_unigene=Hs.607594 | |nearest_unigene=Hs.607594 | ||
| − | |num_trans= | + | |num_trans=40 |
|species=human | |species=human | ||
|start=59362867 | |start=59362867 | ||
|start_of_center_position=59362874 | |start_of_center_position=59362874 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000468840.6 NM_001143773 | + | |transcript_name=ENST00000468840.6 NM_001347847 NM_001347845 NM_001347844 NM_001347843 NM_001347848 NM_001143773 NM_001347846 AK299924 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_109460.1 | |tss_id=hg_109460.1 | ||
Revision as of 19:47, 15 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 59362874 |
|---|---|
| End of the center position in the TSS region: | 59362875 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000468840.6 NM_001347847 NM_001347845 NM_001347844 NM_001347843 NM_001347848 NM_001143773 NM_001347846 AK299924 |
|---|---|
| Distance: | -21 |
| Num_trans: | 40 |
| All_trans: | ENST00000468840.6:-21 NM_001347847:-21 NM_001347845:-21 NM_001347844:-21 NM_001347843:-21 NM_001347848:-21 NM_001143773:-21 NM_001347846:-21 AK299924:-21 ENST00000503444.1:38 ENST00000470220.5:167 ENST00000618427.4:274 ENST00000611933.4:274 NM_001001971:274 NM_001166698:274 NM_001347850:274 NM_001347851:274 NM_001347852:274 NM_001347849:274 BC064431:274 ENST00000622363.4:278 AK316542:278 ENST00000512919.5:-299 NM_001347842:-299 NM_001347840:-299 ENST00000621119.4:304 BC036453:318 ENST00000618804.5:319 NM_198215:319 ENST00000614220.4:321 ENST00000619059.4:346 AK289796:348 AK294805:359 ENST00000435852.6:360 ENST00000422313.6:408 KJ895852:408 KJ900467:408 DQ894404:408 EU176262:408 CU687880:408 |
TATA-Box annotation
| Distance to TSS: | 28 |
|---|---|
| Nearest PromoterID: | NM_001347847 |
| Entrez ID: | 220965 |
| Nearest Unigene: | Hs.607594 |
| Nearest Refseq: | NM_198215 |
| Nearest Ensembl: | ENSG00000148541 |
| Gene Name: | family with sequence similarity 13 member C |
| Gene Alias: | FAM13C1 |
| Gene Description: | family with sequence similarity 13 member C |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.567164 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
