Difference between revisions of "TSS:Hg 109520.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|MRT37= | |MRT37= | ||
| − | |all_trans= | + | |all_trans=U13616:-120 ENST00000280772.7:-265 NM_020987:-265 NM_001320874:-265 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
|distance=-120 | |distance=-120 | ||
| − | |distance_to_tss= | + | |distance_to_tss=267 |
|end=60389610 | |end=60389610 | ||
|end_of_center_position=60389608 | |end_of_center_position=60389608 | ||
|entrez_id=288 | |entrez_id=288 | ||
|gc_percent=0.412935 | |gc_percent=0.412935 | ||
| − | |gene_alias=ANKYRIN-G | + | |gene_alias=ANKYRIN-G{{!}}MRT37 |
|gene_description=ankyrin 3 | |gene_description=ankyrin 3 | ||
|gene_id=288 | |gene_id=288 | ||
| − | |gene_name= | + | |gene_name=ankyrin 3 |
|gene_source=HGNC:494 | |gene_source=HGNC:494 | ||
|gene_symbol=ANK3 | |gene_symbol=ANK3 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:494 | |hgnc_mgi_id=HGNC:494 | ||
|nearest_ensembl=ENSG00000151150 | |nearest_ensembl=ENSG00000151150 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001320874 |
|nearest_refseq=NM_001149 | |nearest_refseq=NM_001149 | ||
|nearest_unigene=Hs.499725 | |nearest_unigene=Hs.499725 | ||
| Line 28: | Line 28: | ||
|start_of_center_position=60389607 | |start_of_center_position=60389607 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=55(CTTTTTAAATGC,+,0.00) |
| − | |transcript_name= | + | |transcript_name=U13616 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_109520.1 | |tss_id=hg_109520.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 19:49, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 60389607 |
|---|---|
| End of the center position in the TSS region: | 60389608 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | U13616 |
|---|---|
| Distance: | -120 |
| Num_trans: | 4 |
| All_trans: | U13616:-120 ENST00000280772.7:-265 NM_020987:-265 NM_001320874:-265 |
TATA-Box annotation
| Distance to TSS: | 267 |
|---|---|
| Nearest PromoterID: | NM_001320874 |
| Entrez ID: | 288 |
| Nearest Unigene: | Hs.499725 |
| Nearest Refseq: | NM_001149 |
| Nearest Ensembl: | ENSG00000151150 |
| Gene Name: | ankyrin 3 |
| Gene Alias: | ANKYRIN-G|MRT37 |
| Gene Description: | ankyrin 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.412935 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 55(CTTTTTAAATGC,+,0.00) |
