Difference between revisions of "TSS:Hg 105233.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|HNRPH3= | |HNRPH3= | ||
| − | |all_trans=AK223441:0 AK291547:0 | + | |all_trans=ENST00000265866.12:0 AK223441:0 AK291547:0 BC039824:2 ENST00000480987.5:3 AK295316:23 ENST00000486854.5:30 ENST00000467249.1:44 NM_012207:-45 NM_001322453:-45 NM_001322452:-45 NM_001322451:-45 NM_001322450:-45 NM_001322439:-45 NM_001322440:-45 NM_001322436:-45 NM_001322434:-45 NM_001322442:-45 NM_001322448:-45 NM_001322447:-45 NM_001322446:-45 NM_001322444:-45 NM_001322443:-45 NM_021644:-45 ENST00000354695.5:49 AF132361:49 L32610:110 ENST00000461310.5:-335 NM_001322438:-363 NM_001322445:-363 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| Line 10: | Line 10: | ||
|entrez_id=3189 | |entrez_id=3189 | ||
|gc_percent=0.641791 | |gc_percent=0.641791 | ||
| − | |gene_alias=2H9 | + | |gene_alias=2H9{{!}}HNRPH3 |
|gene_description=heterogeneous nuclear ribonucleoprotein H3 | |gene_description=heterogeneous nuclear ribonucleoprotein H3 | ||
|gene_id=3189 | |gene_id=3189 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:5043 | |hgnc_mgi_id=HGNC:5043 | ||
|nearest_ensembl=ENSG00000096746 | |nearest_ensembl=ENSG00000096746 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001322442 |
|nearest_refseq=NM_012207 | |nearest_refseq=NM_012207 | ||
|nearest_unigene=Hs.643472 | |nearest_unigene=Hs.643472 | ||
| − | |num_trans= | + | |num_trans=30 |
|species=human | |species=human | ||
|start=68332055 | |start=68332055 | ||
|start_of_center_position=68332064 | |start_of_center_position=68332064 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=AK223441 AK291547 | + | |transcript_name=ENST00000265866.12 AK223441 AK291547 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105233.1 | |tss_id=hg_105233.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q53F48 | + | |uniprot_id=A0A024QZK8 Q53F48 |
}} | }} | ||
Revision as of 18:09, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 68332064 |
|---|---|
| End of the center position in the TSS region: | 68332065 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000265866.12 AK223441 AK291547 |
|---|---|
| Distance: | 0 |
| Num_trans: | 30 |
| All_trans: | ENST00000265866.12:0 AK223441:0 AK291547:0 BC039824:2 ENST00000480987.5:3 AK295316:23 ENST00000486854.5:30 ENST00000467249.1:44 NM_012207:-45 NM_001322453:-45 NM_001322452:-45 NM_001322451:-45 NM_001322450:-45 NM_001322439:-45 NM_001322440:-45 NM_001322436:-45 NM_001322434:-45 NM_001322442:-45 NM_001322448:-45 NM_001322447:-45 NM_001322446:-45 NM_001322444:-45 NM_001322443:-45 NM_021644:-45 ENST00000354695.5:49 AF132361:49 L32610:110 ENST00000461310.5:-335 NM_001322438:-363 NM_001322445:-363 |
TATA-Box annotation
| Distance to TSS: | 53 |
|---|---|
| Nearest PromoterID: | NM_001322442 |
| Entrez ID: | 3189 |
| Nearest Unigene: | Hs.643472 |
| Nearest Refseq: | NM_012207 |
| Nearest Ensembl: | ENSG00000096746 |
| Gene Name: | heterogeneous nuclear ribonucleoprotein H3 |
| Gene Alias: | 2H9|HNRPH3 |
| Gene Description: | heterogeneous nuclear ribonucleoprotein H3 |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.641791 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
