Difference between revisions of "TSS:Hg 105272.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=NM_152709: | + | |all_trans=ENST00000298596.11:16 NM_001130161:16 NM_152709:16 NM_001130159:22 NM_001130160:22 BC140011:22 ENST00000399169.8:26 BC168379:108 ENST00000399162.2:109 ENST00000399165.8:109 ENST00000642869.1:109 AY842014:109 AY842015:109 AY842016:109 AY842017:109 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.165 | |cpg_percent=0.165 | ||
| − | |distance= | + | |distance=16 |
| − | |distance_to_tss=- | + | |distance_to_tss=-28 |
|end=68827515 | |end=68827515 | ||
|end_of_center_position=68827503 | |end_of_center_position=68827503 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:23508 | |hgnc_mgi_id=HGNC:23508 | ||
|nearest_ensembl=ENSG00000165730 | |nearest_ensembl=ENSG00000165730 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001130161 |
|nearest_refseq=NM_152709 | |nearest_refseq=NM_152709 | ||
|nearest_unigene=Hs.37636 | |nearest_unigene=Hs.37636 | ||
| − | |num_trans= | + | |num_trans=15 |
|species=human | |species=human | ||
|start=68827490 | |start=68827490 | ||
|start_of_center_position=68827502 | |start_of_center_position=68827502 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=NM_152709 | + | |transcript_name=ENST00000298596.11 NM_001130161 NM_152709 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105272.1 | |tss_id=hg_105272.1 | ||
Revision as of 18:10, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 68827502 |
|---|---|
| End of the center position in the TSS region: | 68827503 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000298596.11 NM_001130161 NM_152709 |
|---|---|
| Distance: | 16 |
| Num_trans: | 15 |
| All_trans: | ENST00000298596.11:16 NM_001130161:16 NM_152709:16 NM_001130159:22 NM_001130160:22 BC140011:22 ENST00000399169.8:26 BC168379:108 ENST00000399162.2:109 ENST00000399165.8:109 ENST00000642869.1:109 AY842014:109 AY842015:109 AY842016:109 AY842017:109 |
TATA-Box annotation
| Distance to TSS: | -28 |
|---|---|
| Nearest PromoterID: | NM_001130161 |
| Entrez ID: | 219736 |
| Nearest Unigene: | Hs.37636 |
| Nearest Refseq: | NM_152709 |
| Nearest Ensembl: | ENSG00000165730 |
| Gene Name: | storkhead box 1 |
| Gene Alias: | C10orf24 |
| Gene Description: | storkhead box 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.165 |
| GC%: | 0.79602 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
