Difference between revisions of "TSS:Hg 105375.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=ENST00000676923.1:0 ENST00000679349.1:0 ENST00000373255.9:0 ENST00000678178.1:0 ENST00000676608.1:0 ENST00000455786.1:0 NM_018649:0 BC016172:0 AK022776:0 AK131057:0 AF151534:0 AF336304:0 AK022475:0 ENST00000676609.1:-16 ENST00000677659.1:-46 ENST00000676699.1:-234 ENST00000676683.1:-234 ENST00000677255.1:-278 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=9 |
|end=70052888 | |end=70052888 | ||
|end_of_center_position=70052855 | |end_of_center_position=70052855 | ||
| Line 12: | Line 12: | ||
|gene_description=H2A histone family member Y2 | |gene_description=H2A histone family member Y2 | ||
|gene_id=55506 | |gene_id=55506 | ||
| − | |gene_name= | + | |gene_name=macroH2A.2 histone |
|gene_source=HGNC:14453 | |gene_source=HGNC:14453 | ||
| − | |gene_symbol= | + | |gene_symbol=MACROH2A2 |
| − | |gene_synonyms= | + | |gene_synonyms= |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:14453 | |hgnc_mgi_id=HGNC:14453 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_018649 | |nearest_refseq=NM_018649 | ||
|nearest_unigene=Hs.499953 | |nearest_unigene=Hs.499953 | ||
| − | |num_trans= | + | |num_trans=18 |
|species=human | |species=human | ||
|start=70052821 | |start=70052821 | ||
|start_of_center_position=70052854 | |start_of_center_position=70052854 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000676923.1 ENST00000679349.1 ENST00000373255.9 ENST00000678178.1 ENST00000676608.1 ENST00000455786.1 NM_018649 BC016172 AK022776 AK131057 AF151534 AF336304 AK022475 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105375.1 | |tss_id=hg_105375.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q5SQT3 Q9HA11 | + | |uniprot_id=A0A024QZP6 Q5SQT3 Q9HA11 Q9P0M6 |
}} | }} | ||
Revision as of 18:12, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 70052854 |
|---|---|
| End of the center position in the TSS region: | 70052855 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000676923.1 ENST00000679349.1 ENST00000373255.9 ENST00000678178.1 ENST00000676608.1 ENST00000455786.1 NM_018649 BC016172 AK022776 AK131057 AF151534 AF336304 AK022475 |
|---|---|
| Distance: | 0 |
| Num_trans: | 18 |
| All_trans: | ENST00000676923.1:0 ENST00000679349.1:0 ENST00000373255.9:0 ENST00000678178.1:0 ENST00000676608.1:0 ENST00000455786.1:0 NM_018649:0 BC016172:0 AK022776:0 AK131057:0 AF151534:0 AF336304:0 AK022475:0 ENST00000676609.1:-16 ENST00000677659.1:-46 ENST00000676699.1:-234 ENST00000676683.1:-234 ENST00000677255.1:-278 |
TATA-Box annotation
| Distance to TSS: | 9 |
|---|---|
| Nearest PromoterID: | NM_018649 |
| Entrez ID: | 55506 |
| Nearest Unigene: | Hs.499953 |
| Nearest Refseq: | NM_018649 |
| Nearest Ensembl: | ENSG00000099284 |
| Gene Name: | macroH2A.2 histone |
| Gene Alias: | macroH2A2 |
| Gene Description: | H2A histone family member Y2 |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.631841 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
