Difference between revisions of "TSS:Hg 105431.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000398792.3 | + | |all_trans=ENST00000398792.3:-68 AK093818:-68 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
|distance=-68 | |distance=-68 | ||
| − | |distance_to_tss= | + | |distance_to_tss=7102 |
|end=71712680 | |end=71712680 | ||
|end_of_center_position=71712676 | |end_of_center_position=71712676 | ||
| Line 12: | Line 12: | ||
|gene_description=chromosome 10 open reading frame 105 | |gene_description=chromosome 10 open reading frame 105 | ||
|gene_id=64072 | |gene_id=64072 | ||
| − | |gene_name=cadherin | + | |gene_name=cadherin related 23 |
|gene_source=HGNC:13733 | |gene_source=HGNC:13733 | ||
|gene_symbol=CDH23 | |gene_symbol=CDH23 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_001164375 | |nearest_refseq=NM_001164375 | ||
|nearest_unigene=Hs.568788 | |nearest_unigene=Hs.568788 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=human | |species=human | ||
|start=71712671 | |start=71712671 | ||
|start_of_center_position=71712675 | |start_of_center_position=71712675 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000398792.3 | + | |transcript_name=ENST00000398792.3 AK093818 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105431.1 | |tss_id=hg_105431.1 | ||
Revision as of 18:14, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 71712675 |
|---|---|
| End of the center position in the TSS region: | 71712676 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000398792.3 AK093818 |
|---|---|
| Distance: | -68 |
| Num_trans: | 2 |
| All_trans: | ENST00000398792.3:-68 AK093818:-68 |
TATA-Box annotation
| Distance to TSS: | 7102 |
|---|---|
| Nearest PromoterID: | NM_001164375 |
| Entrez ID: | 414152 |
| Nearest Unigene: | Hs.568788 |
| Nearest Refseq: | NM_001164375 |
| Nearest Ensembl: | ENSG00000214688 |
| Gene Name: | cadherin related 23 |
| Gene Alias: | - |
| Gene Description: | chromosome 10 open reading frame 105 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.59204 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
