Difference between revisions of "TSS:Hg 105491.1"
From referenceTSS
| Line 2: | Line 2: | ||
|REDD-1= | |REDD-1= | ||
|REDD1= | |REDD1= | ||
| − | |all_trans= | + | |all_trans=ENST00000491934.3:0 ENST00000471240.2:0 ENST00000473155.2:0 ENST00000681898.1:0 ENST00000307365.4:0 NM_019058:0 LP764833:0 LQ946190:0 AL136668:0 AK000507:0 BC007714:1 AF335324:6 LF208755:-9 MA444332:-9 BC015236:15 AY090097:72 BC000708:92 LF322514:200 MA558091:200 AM392607:283 DQ890984:283 DQ894159:283 AB587474:285 KJ894039:286 LF322513:311 MA558090:311 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-2 |
|end=72273930 | |end=72273930 | ||
|end_of_center_position=72273923 | |end_of_center_position=72273923 | ||
|entrez_id=54541 | |entrez_id=54541 | ||
|gc_percent=0.691542 | |gc_percent=0.691542 | ||
| − | |gene_alias=Dig2 | + | |gene_alias=Dig2{{!}}REDD-1{{!}}REDD1 |
|gene_description=DNA damage inducible transcript 4 | |gene_description=DNA damage inducible transcript 4 | ||
|gene_id=54541 | |gene_id=54541 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_019058 | |nearest_refseq=NM_019058 | ||
|nearest_unigene=Hs.744875 | |nearest_unigene=Hs.744875 | ||
| − | |num_trans= | + | |num_trans=26 |
|species=human | |species=human | ||
|start=72273914 | |start=72273914 | ||
|start_of_center_position=72273922 | |start_of_center_position=72273922 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-32(GTCCTTATAGGC,-,0.00),-30(CCTTATAGGCTG,+,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000491934.3 ENST00000471240.2 ENST00000473155.2 ENST00000681898.1 ENST00000307365.4 NM_019058 LP764833 LQ946190 AL136668 AK000507 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105491.1 | |tss_id=hg_105491.1 | ||
Revision as of 18:15, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 72273922 |
|---|---|
| End of the center position in the TSS region: | 72273923 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000491934.3 ENST00000471240.2 ENST00000473155.2 ENST00000681898.1 ENST00000307365.4 NM_019058 LP764833 LQ946190 AL136668 AK000507 |
|---|---|
| Distance: | 0 |
| Num_trans: | 26 |
| All_trans: | ENST00000491934.3:0 ENST00000471240.2:0 ENST00000473155.2:0 ENST00000681898.1:0 ENST00000307365.4:0 NM_019058:0 LP764833:0 LQ946190:0 AL136668:0 AK000507:0 BC007714:1 AF335324:6 LF208755:-9 MA444332:-9 BC015236:15 AY090097:72 BC000708:92 LF322514:200 MA558091:200 AM392607:283 DQ890984:283 DQ894159:283 AB587474:285 KJ894039:286 LF322513:311 MA558090:311 |
TATA-Box annotation
| Distance to TSS: | -2 |
|---|---|
| Nearest PromoterID: | NM_019058 |
| Entrez ID: | 54541 |
| Nearest Unigene: | Hs.744875 |
| Nearest Refseq: | NM_019058 |
| Nearest Ensembl: | ENSG00000168209 |
| Gene Name: | DNA damage inducible transcript 4 |
| Gene Alias: | Dig2|REDD-1|REDD1 |
| Gene Description: | DNA damage inducible transcript 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.691542 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -32(GTCCTTATAGGC,-,0.00),-30(CCTTATAGGCTG,+,0.00) |
