Difference between revisions of "TSS:Hg 105498.1"
From referenceTSS
| Line 2: | Line 2: | ||
|REDD-1= | |REDD-1= | ||
|REDD1= | |REDD1= | ||
| + | |all_trans=LF322512:-116 MA558089:-116 LF322511:319 MA558088:319 LF322510:473 MA558087:473 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=-116 |
| − | |distance_to_tss= | + | |distance_to_tss=1404 |
|end=72275332 | |end=72275332 | ||
|end_of_center_position=72275328 | |end_of_center_position=72275328 | ||
|entrez_id=54541 | |entrez_id=54541 | ||
|gc_percent=0.537313 | |gc_percent=0.537313 | ||
| − | |gene_alias=Dig2 | + | |gene_alias=Dig2{{!}}REDD-1{{!}}REDD1 |
|gene_description=DNA damage inducible transcript 4 | |gene_description=DNA damage inducible transcript 4 | ||
|gene_name=DDIT4 | |gene_name=DDIT4 | ||
| Line 18: | Line 19: | ||
|nearest_refseq=NM_019058 | |nearest_refseq=NM_019058 | ||
|nearest_unigene=Hs.744875 | |nearest_unigene=Hs.744875 | ||
| − | |num_trans= | + | |num_trans=6 |
|species=human | |species=human | ||
|start=72275323 | |start=72275323 | ||
|start_of_center_position=72275327 | |start_of_center_position=72275327 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF322512 MA558089 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105498.1 | |tss_id=hg_105498.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 18:15, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 72275327 |
|---|---|
| End of the center position in the TSS region: | 72275328 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF322512 MA558089 |
|---|---|
| Distance: | -116 |
| Num_trans: | 6 |
| All_trans: | LF322512:-116 MA558089:-116 LF322511:319 MA558088:319 LF322510:473 MA558087:473 |
TATA-Box annotation
| Distance to TSS: | 1404 |
|---|---|
| Nearest PromoterID: | NM_019058 |
| Entrez ID: | 54541 |
| Nearest Unigene: | Hs.744875 |
| Nearest Refseq: | NM_019058 |
| Nearest Ensembl: | ENSG00000168209 |
| Gene Name: | DDIT4 |
| Gene Alias: | Dig2|REDD-1|REDD1 |
| Gene Description: | DNA damage inducible transcript 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.537313 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
