Difference between revisions of "TSS:Hg 105562.1"
From referenceTSS
| Line 4: | Line 4: | ||
|UPA= | |UPA= | ||
|URK= | |URK= | ||
| − | |all_trans= | + | |all_trans=LF212558:-116 MA448135:-116 ENST00000496926.1:-184 ENST00000446342.5:307 ENST00000372764.4:335 NM_001319191:335 NM_001145031:335 NM_002658:335 AK312960:335 AK298560:335 AK297940:335 LF209952:348 MA445529:348 ENST00000494287.1:350 BC013575:361 AH007073:373 M15476:380 D00244:387 LF213792:393 MA449369:393 X02760:413 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| − | |distance=- | + | |distance=-116 |
|distance_to_tss=-308 | |distance_to_tss=-308 | ||
|end=73910797 | |end=73910797 | ||
| Line 13: | Line 13: | ||
|entrez_id=5328 | |entrez_id=5328 | ||
|gc_percent=0.597015 | |gc_percent=0.597015 | ||
| − | |gene_alias=ATF | + | |gene_alias=ATF{{!}}BDPLT5{{!}}QPD{{!}}UPA{{!}}URK{{!}}u-PA |
| − | |gene_description= | + | |gene_description=plasminogen activator, urokinase |
|gene_id=5328 | |gene_id=5328 | ||
| − | |gene_name= | + | |gene_name=PLAU |
|gene_source=HGNC:9052 | |gene_source=HGNC:9052 | ||
|gene_symbol=PLAU | |gene_symbol=PLAU | ||
| Line 23: | Line 23: | ||
|hgnc_mgi_id=HGNC:9052 | |hgnc_mgi_id=HGNC:9052 | ||
|nearest_ensembl=ENSG00000122861 | |nearest_ensembl=ENSG00000122861 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001145031 |
|nearest_refseq=NM_002658 | |nearest_refseq=NM_002658 | ||
|nearest_unigene=Hs.77274 | |nearest_unigene=Hs.77274 | ||
| − | |num_trans= | + | |num_trans=21 |
|species=human | |species=human | ||
|start=73910788 | |start=73910788 | ||
|start_of_center_position=73910792 | |start_of_center_position=73910792 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF212558 MA448135 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105562.1 | |tss_id=hg_105562.1 | ||
Latest revision as of 18:17, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 73910792 |
|---|---|
| End of the center position in the TSS region: | 73910793 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF212558 MA448135 |
|---|---|
| Distance: | -116 |
| Num_trans: | 21 |
| All_trans: | LF212558:-116 MA448135:-116 ENST00000496926.1:-184 ENST00000446342.5:307 ENST00000372764.4:335 NM_001319191:335 NM_001145031:335 NM_002658:335 AK312960:335 AK298560:335 AK297940:335 LF209952:348 MA445529:348 ENST00000494287.1:350 BC013575:361 AH007073:373 M15476:380 D00244:387 LF213792:393 MA449369:393 X02760:413 |
TATA-Box annotation
| Distance to TSS: | -308 |
|---|---|
| Nearest PromoterID: | NM_001145031 |
| Entrez ID: | 5328 |
| Nearest Unigene: | Hs.77274 |
| Nearest Refseq: | NM_002658 |
| Nearest Ensembl: | ENSG00000122861 |
| Gene Name: | PLAU |
| Gene Alias: | ATF|BDPLT5|QPD|UPA|URK|u-PA |
| Gene Description: | plasminogen activator, urokinase |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.597015 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
