Difference between revisions of "TSS:Hg 105572.1"
From referenceTSS
| Line 4: | Line 4: | ||
|MV= | |MV= | ||
|MVCL= | |MVCL= | ||
| − | |all_trans=ENST00000624354.3 | + | |all_trans=LF209953:169 MA445530:169 ENST00000624354.3:219 ENST00000372755.7:219 AK304823:219 EU794673:219 LF384967:219 MA620544:219 ENST00000478896.2:221 ENST00000211998.10:221 NM_003373:221 NM_014000:221 AK300280:221 AK296509:222 LF333168:224 MA568745:224 BC099919:231 BC039174:232 GQ900900:232 M33308:270 AB385172:309 DQ894680:313 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| − | |distance= | + | |distance=169 |
|distance_to_tss=-222 | |distance_to_tss=-222 | ||
|end=73997895 | |end=73997895 | ||
| Line 13: | Line 13: | ||
|entrez_id=7414 | |entrez_id=7414 | ||
|gc_percent=0.741294 | |gc_percent=0.741294 | ||
| − | |gene_alias=CMD1W | + | |gene_alias=CMD1W{{!}}CMH15{{!}}HEL114{{!}}MV{{!}}MVCL |
|gene_description=vinculin | |gene_description=vinculin | ||
|gene_id=7414 | |gene_id=7414 | ||
| − | |gene_name= | + | |gene_name=VCL |
|gene_source=HGNC:12665 | |gene_source=HGNC:12665 | ||
|gene_symbol=VCL | |gene_symbol=VCL | ||
| Line 23: | Line 23: | ||
|hgnc_mgi_id=HGNC:12665 | |hgnc_mgi_id=HGNC:12665 | ||
|nearest_ensembl=ENSG00000035403 | |nearest_ensembl=ENSG00000035403 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_014000 |
|nearest_refseq=NM_003373 | |nearest_refseq=NM_003373 | ||
|nearest_unigene=Hs.643896 | |nearest_unigene=Hs.643896 | ||
| − | |num_trans= | + | |num_trans=22 |
|species=human | |species=human | ||
|start=73997888 | |start=73997888 | ||
|start_of_center_position=73997891 | |start_of_center_position=73997891 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-33(GCCCTTATAAGG,-,0.00),-31(CCTTATAAGGAG,+,0.00) |
| − | |transcript_name= | + | |transcript_name=LF209953 MA445530 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105572.1 | |tss_id=hg_105572.1 | ||
Latest revision as of 18:17, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 73997891 |
|---|---|
| End of the center position in the TSS region: | 73997892 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF209953 MA445530 |
|---|---|
| Distance: | 169 |
| Num_trans: | 22 |
| All_trans: | LF209953:169 MA445530:169 ENST00000624354.3:219 ENST00000372755.7:219 AK304823:219 EU794673:219 LF384967:219 MA620544:219 ENST00000478896.2:221 ENST00000211998.10:221 NM_003373:221 NM_014000:221 AK300280:221 AK296509:222 LF333168:224 MA568745:224 BC099919:231 BC039174:232 GQ900900:232 M33308:270 AB385172:309 DQ894680:313 |
TATA-Box annotation
| Distance to TSS: | -222 |
|---|---|
| Nearest PromoterID: | NM_014000 |
| Entrez ID: | 7414 |
| Nearest Unigene: | Hs.643896 |
| Nearest Refseq: | NM_003373 |
| Nearest Ensembl: | ENSG00000035403 |
| Gene Name: | VCL |
| Gene Alias: | CMD1W|CMH15|HEL114|MV|MVCL |
| Gene Description: | vinculin |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.741294 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -33(GCCCTTATAAGG,-,0.00),-31(CCTTATAAGGAG,+,0.00) |
