Difference between revisions of "TSS:Hg 105573.1"
From referenceTSS
| Line 4: | Line 4: | ||
|MV= | |MV= | ||
|MVCL= | |MVCL= | ||
| − | |all_trans=ENST00000624354.3 | + | |all_trans=LF209953:-20 MA445530:-20 ENST00000624354.3:21 ENST00000372755.7:21 AK304823:21 EU794673:21 LF384967:21 MA620544:21 ENST00000478896.2:23 ENST00000211998.10:23 NM_003373:23 NM_014000:23 AK300280:23 AK296509:24 LF333168:26 MA568745:26 BC099919:33 BC039174:34 GQ900900:34 M33308:72 AB385172:111 DQ894680:115 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
| − | |distance= | + | |distance=-20 |
|distance_to_tss=-26 | |distance_to_tss=-26 | ||
|end=73998093 | |end=73998093 | ||
| Line 13: | Line 13: | ||
|entrez_id=7414 | |entrez_id=7414 | ||
|gc_percent=0.681592 | |gc_percent=0.681592 | ||
| − | |gene_alias=CMD1W | + | |gene_alias=CMD1W{{!}}CMH15{{!}}HEL114{{!}}MV{{!}}MVCL |
|gene_description=vinculin | |gene_description=vinculin | ||
|gene_id=7414 | |gene_id=7414 | ||
| − | |gene_name= | + | |gene_name=VCL |
|gene_source=HGNC:12665 | |gene_source=HGNC:12665 | ||
|gene_symbol=VCL | |gene_symbol=VCL | ||
| Line 23: | Line 23: | ||
|hgnc_mgi_id=HGNC:12665 | |hgnc_mgi_id=HGNC:12665 | ||
|nearest_ensembl=ENSG00000035403 | |nearest_ensembl=ENSG00000035403 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_014000 |
|nearest_refseq=NM_003373 | |nearest_refseq=NM_003373 | ||
|nearest_unigene=Hs.643896 | |nearest_unigene=Hs.643896 | ||
| − | |num_trans= | + | |num_trans=22 |
|species=human | |species=human | ||
|start=73998083 | |start=73998083 | ||
|start_of_center_position=73998088 | |start_of_center_position=73998088 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF209953 MA445530 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105573.1 | |tss_id=hg_105573.1 | ||
Latest revision as of 18:17, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 73998088 |
|---|---|
| End of the center position in the TSS region: | 73998089 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF209953 MA445530 |
|---|---|
| Distance: | -20 |
| Num_trans: | 22 |
| All_trans: | LF209953:-20 MA445530:-20 ENST00000624354.3:21 ENST00000372755.7:21 AK304823:21 EU794673:21 LF384967:21 MA620544:21 ENST00000478896.2:23 ENST00000211998.10:23 NM_003373:23 NM_014000:23 AK300280:23 AK296509:24 LF333168:26 MA568745:26 BC099919:33 BC039174:34 GQ900900:34 M33308:72 AB385172:111 DQ894680:115 |
TATA-Box annotation
| Distance to TSS: | -26 |
|---|---|
| Nearest PromoterID: | NM_014000 |
| Entrez ID: | 7414 |
| Nearest Unigene: | Hs.643896 |
| Nearest Refseq: | NM_003373 |
| Nearest Ensembl: | ENSG00000035403 |
| Gene Name: | VCL |
| Gene Alias: | CMD1W|CMH15|HEL114|MV|MVCL |
| Gene Description: | vinculin |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.681592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
