Difference between revisions of "TSS:Hg 105615.1"
From referenceTSS
| Line 3: | Line 3: | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=NA |
| − | |distance_to_tss= | + | |distance_to_tss=28930 |
|end=75140591 | |end=75140591 | ||
|end_of_center_position=75140586 | |end_of_center_position=75140586 | ||
|entrez_id=142891 | |entrez_id=142891 | ||
|gc_percent=0.437811 | |gc_percent=0.437811 | ||
| − | |gene_alias=HEL-177 | + | |gene_alias=HEL-177{{!}}SMSr |
|gene_description=sterile alpha motif domain containing 8 | |gene_description=sterile alpha motif domain containing 8 | ||
|gene_name=SAMD8 | |gene_name=SAMD8 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000156671 | |nearest_ensembl=ENSG00000156671 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001174156 |
|nearest_refseq=NM_144660 | |nearest_refseq=NM_144660 | ||
|nearest_unigene=Hs.744986 | |nearest_unigene=Hs.744986 | ||
| Line 22: | Line 22: | ||
|start_of_center_position=75140585 | |start_of_center_position=75140585 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-35(ACCCTTAAAAGG,-,0.00),-34(CCCTTAAAAGGG,+,0.00),-33(CCTTAAAAGGGA,+,0.00) |
|transcript_name= | |transcript_name= | ||
|tss_classification=no | |tss_classification=no | ||
Latest revision as of 18:18, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 75140585 |
|---|---|
| End of the center position in the TSS region: | 75140586 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | 28930 |
|---|---|
| Nearest PromoterID: | NM_001174156 |
| Entrez ID: | 142891 |
| Nearest Unigene: | Hs.744986 |
| Nearest Refseq: | NM_144660 |
| Nearest Ensembl: | ENSG00000156671 |
| Gene Name: | SAMD8 |
| Gene Alias: | HEL-177|SMSr |
| Gene Description: | sterile alpha motif domain containing 8 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.437811 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -35(ACCCTTAAAAGG,-,0.00),-34(CCCTTAAAAGGG,+,0.00),-33(CCTTAAAAGGGA,+,0.00) |
