Difference between revisions of "TSS:Hg 105617.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=DQ577136:109 | + | |all_trans=DQ577136:109 LF333484:-282 MA569061:-282 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
| Line 14: | Line 14: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000165637 | |nearest_ensembl=ENSG00000165637 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001324089 |
|nearest_refseq=NM_003375 | |nearest_refseq=NM_003375 | ||
|nearest_unigene=Hs.355927 | |nearest_unigene=Hs.355927 | ||
| − | |num_trans= | + | |num_trans=3 |
|species=human | |species=human | ||
|start=75180032 | |start=75180032 | ||
|start_of_center_position=75180034 | |start_of_center_position=75180034 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-6(TTTTTTAAAGAC,+,0.00) |
|transcript_name=DQ577136 | |transcript_name=DQ577136 | ||
|tss_classification=no | |tss_classification=no | ||
Latest revision as of 18:18, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 75180034 |
|---|---|
| End of the center position in the TSS region: | 75180035 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | DQ577136 |
|---|---|
| Distance: | 109 |
| Num_trans: | 3 |
| All_trans: | DQ577136:109 LF333484:-282 MA569061:-282 |
TATA-Box annotation
| Distance to TSS: | -30120 |
|---|---|
| Nearest PromoterID: | NM_001324089 |
| Entrez ID: | 7417 |
| Nearest Unigene: | Hs.355927 |
| Nearest Refseq: | NM_003375 |
| Nearest Ensembl: | ENSG00000165637 |
| Gene Name: | VDAC2 |
| Gene Alias: | POR |
| Gene Description: | voltage dependent anion channel 2 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.378109 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -6(TTTTTTAAAGAC,+,0.00) |
