Difference between revisions of "TSS:Hg 232396.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=ENST00000645440.1:20 ENST00000478655.6:47 ENST00000485708.7:47 ENST00000464716.6:47 ENST00000360830.9:47 ENST00000372360.9:47 ENST00000440692.6:47 NM_001142285:47 NM_033022:47 D28424:47 AK311776:47 AK311910:47 BX537975:49 M31520:49 ENST00000435275.5:-56 ENST00000613865.5:-56 NM_001026:-56 NM_001142283:-56 NM_001142284:-56 NM_001142282:-56 ENST00000645698.1:58 BX647260:58 ENST00000476545.6:61 BC071926:62 AF147330:63 BC000523:67 ENST00000466129.6:70 BC003149:71 ENST00000465692.2:75 ENST00000475468.6:88 ENST00000482069.5:101 ENST00000646254.1:394 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| − | |distance= | + | |distance=20 |
|distance_to_tss=701 | |distance_to_tss=701 | ||
|end=75210859 | |end=75210859 | ||
| Line 11: | Line 11: | ||
|gene_alias=POR | |gene_alias=POR | ||
|gene_description=voltage dependent anion channel 2 | |gene_description=voltage dependent anion channel 2 | ||
| − | |gene_id= | + | |gene_id=6229 |
| − | |gene_name= | + | |gene_name=ribosomal protein S24 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:10411 |
| − | |gene_symbol= | + | |gene_symbol=RPS24 |
| − | |gene_synonyms= | + | |gene_synonyms=S24 eS24 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:10411 |
|nearest_ensembl=ENSG00000165637 | |nearest_ensembl=ENSG00000165637 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001184823 |
|nearest_refseq=NM_003375 | |nearest_refseq=NM_003375 | ||
|nearest_unigene=Hs.355927 | |nearest_unigene=Hs.355927 | ||
| Line 27: | Line 27: | ||
|start_of_center_position=78033815 | |start_of_center_position=78033815 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000645440.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_232396.1 | |tss_id=hg_232396.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A2R8Y849 |
}} | }} | ||
Revision as of 12:23, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 78033815 |
|---|---|
| End of the center position in the TSS region: | 78033816 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000645440.1 |
|---|---|
| Distance: | 20 |
| Num_trans: | 32 |
| All_trans: | ENST00000645440.1:20 ENST00000478655.6:47 ENST00000485708.7:47 ENST00000464716.6:47 ENST00000360830.9:47 ENST00000372360.9:47 ENST00000440692.6:47 NM_001142285:47 NM_033022:47 D28424:47 AK311776:47 AK311910:47 BX537975:49 M31520:49 ENST00000435275.5:-56 ENST00000613865.5:-56 NM_001026:-56 NM_001142283:-56 NM_001142284:-56 NM_001142282:-56 ENST00000645698.1:58 BX647260:58 ENST00000476545.6:61 BC071926:62 AF147330:63 BC000523:67 ENST00000466129.6:70 BC003149:71 ENST00000465692.2:75 ENST00000475468.6:88 ENST00000482069.5:101 ENST00000646254.1:394 |
TATA-Box annotation
| Distance to TSS: | 701 |
|---|---|
| Nearest PromoterID: | NM_001184823 |
| Entrez ID: | 7417 |
| Nearest Unigene: | Hs.355927 |
| Nearest Refseq: | NM_003375 |
| Nearest Ensembl: | ENSG00000165637 |
| Gene Name: | ribosomal protein S24 |
| Gene Alias: | POR |
| Gene Description: | voltage dependent anion channel 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.746269 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
