Difference between revisions of "TSS:Hg 105975.1"
From referenceTSS
| Line 10: | Line 10: | ||
|PDLIM6= | |PDLIM6= | ||
|ZASP= | |ZASP= | ||
| − | |all_trans= | + | |all_trans=BC010929:0 AB014513:0 BC111457:9 KJ898368:12 KR710344:12 KR710345:12 KR710346:12 KR710347:12 AB383921:13 ENST00000372056.8:14 ENST00000542786.2:14 ENST00000623007.3:14 KU178543:14 KU178544:14 KU178545:14 AF276807:14 AF276808:14 AF276809:14 KF772970:14 AJ133767:14 AJ133768:14 ENST00000372066.8:-31 AJ133766:-31 NM_001080116:-80 ENST00000263066.11:-133 ENST00000429277.7:-133 ENST00000361373.9:-133 NM_001080115:-133 NM_001080114:-133 NM_001171611:-133 NM_001368067:-133 NM_007078:-133 NM_001368065:-133 NM_001368066:-133 NM_001171610:-133 AK297871:-133 AK300692:-134 ENST00000623056.4:-137 AK304760:-137 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=97 |
|end=86668678 | |end=86668678 | ||
|end_of_center_position=86668661 | |end_of_center_position=86668661 | ||
|entrez_id=11155 | |entrez_id=11155 | ||
|gc_percent=0.656716 | |gc_percent=0.656716 | ||
| − | |gene_alias=CMD1C | + | |gene_alias=CMD1C{{!}}CMH24{{!}}CMPD3{{!}}CYPHER{{!}}LDB3Z1{{!}}LDB3Z4{{!}}LVNC3{{!}}MFM4{{!}}ORACLE{{!}}PDLIM6{{!}}ZASP |
|gene_description=LIM domain binding 3 | |gene_description=LIM domain binding 3 | ||
|gene_id=11155 | |gene_id=11155 | ||
| Line 29: | Line 29: | ||
|hgnc_mgi_id=HGNC:15710 | |hgnc_mgi_id=HGNC:15710 | ||
|nearest_ensembl=ENSG00000122367 | |nearest_ensembl=ENSG00000122367 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001080116 |
|nearest_refseq=NM_007078 | |nearest_refseq=NM_007078 | ||
|nearest_unigene=Hs.657271 | |nearest_unigene=Hs.657271 | ||
| − | |num_trans= | + | |num_trans=39 |
|species=human | |species=human | ||
|start=86668643 | |start=86668643 | ||
|start_of_center_position=86668660 | |start_of_center_position=86668660 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=BC010929 AB014513 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105975.1 | |tss_id=hg_105975.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 18:26, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 86668660 |
|---|---|
| End of the center position in the TSS region: | 86668661 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC010929 AB014513 |
|---|---|
| Distance: | 0 |
| Num_trans: | 39 |
| All_trans: | BC010929:0 AB014513:0 BC111457:9 KJ898368:12 KR710344:12 KR710345:12 KR710346:12 KR710347:12 AB383921:13 ENST00000372056.8:14 ENST00000542786.2:14 ENST00000623007.3:14 KU178543:14 KU178544:14 KU178545:14 AF276807:14 AF276808:14 AF276809:14 KF772970:14 AJ133767:14 AJ133768:14 ENST00000372066.8:-31 AJ133766:-31 NM_001080116:-80 ENST00000263066.11:-133 ENST00000429277.7:-133 ENST00000361373.9:-133 NM_001080115:-133 NM_001080114:-133 NM_001171611:-133 NM_001368067:-133 NM_007078:-133 NM_001368065:-133 NM_001368066:-133 NM_001171610:-133 AK297871:-133 AK300692:-134 ENST00000623056.4:-137 AK304760:-137 |
TATA-Box annotation
| Distance to TSS: | 97 |
|---|---|
| Nearest PromoterID: | NM_001080116 |
| Entrez ID: | 11155 |
| Nearest Unigene: | Hs.657271 |
| Nearest Refseq: | NM_007078 |
| Nearest Ensembl: | ENSG00000122367 |
| Gene Name: | LIM domain binding 3 |
| Gene Alias: | CMD1C|CMH24|CMPD3|CYPHER|LDB3Z1|LDB3Z4|LVNC3|MFM4|ORACLE|PDLIM6|ZASP |
| Gene Description: | LIM domain binding 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
