Difference between revisions of "TSS:Hg 106038.1"
From referenceTSS
| Line 8: | Line 8: | ||
|PTEN1= | |PTEN1= | ||
|TEP1= | |TEP1= | ||
| − | |all_trans= | + | |all_trans=ENST00000371953.8:0 NM_001304718:0 NM_000314:0 NM_001304717:0 BC005821:0 U96180:10 U92436:-158 KX398936:362 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=7 |
|end=87863669 | |end=87863669 | ||
|end_of_center_position=87863633 | |end_of_center_position=87863633 | ||
|entrez_id=5728 | |entrez_id=5728 | ||
|gc_percent=0.691542 | |gc_percent=0.691542 | ||
| − | |gene_alias=10q23del | + | |gene_alias=10q23del{{!}}BZS{{!}}CWS1{{!}}DEC{{!}}GLM2{{!}}MHAM{{!}}MMAC1{{!}}PTEN1{{!}}PTENbeta{{!}}TEP1 |
|gene_description=phosphatase and tensin homolog | |gene_description=phosphatase and tensin homolog | ||
|gene_id=5728 | |gene_id=5728 | ||
| Line 27: | Line 27: | ||
|hgnc_mgi_id=HGNC:9588 | |hgnc_mgi_id=HGNC:9588 | ||
|nearest_ensembl=ENSG00000171862 | |nearest_ensembl=ENSG00000171862 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001304718 |
|nearest_refseq=NM_000314 | |nearest_refseq=NM_000314 | ||
|nearest_unigene=Hs.500466 | |nearest_unigene=Hs.500466 | ||
| − | |num_trans= | + | |num_trans=8 |
|species=human | |species=human | ||
|start=87863595 | |start=87863595 | ||
|start_of_center_position=87863632 | |start_of_center_position=87863632 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-62(CTCTTTATGCGC,+,0.00) |
| − | |transcript_name=BC005821 | + | |transcript_name=ENST00000371953.8 NM_001304718 NM_000314 NM_001304717 BC005821 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_106038.1 | |tss_id=hg_106038.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=F6KD01 P60484 |
}} | }} | ||
Revision as of 18:28, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 87863632 |
|---|---|
| End of the center position in the TSS region: | 87863633 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000371953.8 NM_001304718 NM_000314 NM_001304717 BC005821 |
|---|---|
| Distance: | 0 |
| Num_trans: | 8 |
| All_trans: | ENST00000371953.8:0 NM_001304718:0 NM_000314:0 NM_001304717:0 BC005821:0 U96180:10 U92436:-158 KX398936:362 |
TATA-Box annotation
| Distance to TSS: | 7 |
|---|---|
| Nearest PromoterID: | NM_001304718 |
| Entrez ID: | 5728 |
| Nearest Unigene: | Hs.500466 |
| Nearest Refseq: | NM_000314 |
| Nearest Ensembl: | ENSG00000171862 |
| Gene Name: | phosphatase and tensin homolog |
| Gene Alias: | 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 |
| Gene Description: | phosphatase and tensin homolog |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.691542 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -62(CTCTTTATGCGC,+,0.00) |
