Difference between revisions of "TSS:Hg 106078.1"
From referenceTSS
| Line 2: | Line 2: | ||
|AMSH-FP= | |AMSH-FP= | ||
|AMSH-LP= | |AMSH-LP= | ||
| − | |all_trans=AB037794:-62 | + | |all_trans=AB037794:-62 ENST00000371927.7:-194 ENST00000461650.1:288 ENST00000371926.8:309 NM_020799:309 AK056086:322 BC010846:333 |
|bA399O19.2= | |bA399O19.2= | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
|distance=-62 | |distance=-62 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-313 |
|end=88879936 | |end=88879936 | ||
|end_of_center_position=88879932 | |end_of_center_position=88879932 | ||
|entrez_id=57559 | |entrez_id=57559 | ||
|gc_percent=0.447761 | |gc_percent=0.447761 | ||
| − | |gene_alias=ALMalpha | + | |gene_alias=ALMalpha{{!}}AMSH-FP{{!}}AMSH-LP{{!}}bA399O19.2 |
|gene_description=STAM binding protein like 1 | |gene_description=STAM binding protein like 1 | ||
|gene_id=57559 | |gene_id=57559 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_020799 | |nearest_refseq=NM_020799 | ||
|nearest_unigene=Hs.16229 | |nearest_unigene=Hs.16229 | ||
| − | |num_trans= | + | |num_trans=7 |
|species=human | |species=human | ||
|start=88879927 | |start=88879927 | ||
|start_of_center_position=88879931 | |start_of_center_position=88879931 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=27(AGTCTTAAAAGG,-,0.00),28(GTCTTAAAAGGC,+,0.00) |
|transcript_name=AB037794 | |transcript_name=AB037794 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 18:29, 15 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 88879931 |
|---|---|
| End of the center position in the TSS region: | 88879932 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AB037794 |
|---|---|
| Distance: | -62 |
| Num_trans: | 7 |
| All_trans: | AB037794:-62 ENST00000371927.7:-194 ENST00000461650.1:288 ENST00000371926.8:309 NM_020799:309 AK056086:322 BC010846:333 |
TATA-Box annotation
| Distance to TSS: | -313 |
|---|---|
| Nearest PromoterID: | NM_020799 |
| Entrez ID: | 57559 |
| Nearest Unigene: | Hs.16229 |
| Nearest Refseq: | NM_020799 |
| Nearest Ensembl: | ENSG00000138134 |
| Gene Name: | STAM binding protein like 1 |
| Gene Alias: | ALMalpha|AMSH-FP|AMSH-LP|bA399O19.2 |
| Gene Description: | STAM binding protein like 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.447761 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 27(AGTCTTAAAAGG,-,0.00),28(GTCTTAAAAGGC,+,0.00) |
