Difference between revisions of "TSS:Hg 106093.1"
From referenceTSS
| Line 6: | Line 6: | ||
|FASTM= | |FASTM= | ||
|TNFRSF6= | |TNFRSF6= | ||
| − | |all_trans= | + | |all_trans=BC012479:7 ENST00000355740.7:-14 KJ958564:-14 KM114217:-14 ENST00000612663.5:22 AK290978:71 X63717:97 AY495076:123 EU481974:123 M67454:123 ENST00000352159.8:127 ENST00000484444.5:171 ENST00000357339.6:218 ENST00000652046.1:238 NR_028036:238 NM_000043:238 NR_028034:238 NR_028033:238 NM_001320619:238 NM_152872:238 NM_152871:238 NR_028035:238 NR_135313:238 ENST00000488877.5:292 ENST00000494410.5:292 ENST00000479522.5:292 X83490:292 X83491:292 X83492:292 X83493:292 DQ894675:314 KJ890693:316 KR709616:316 KR709617:316 KR709618:316 KR709619:316 ENST00000492756.5:317 ENST00000355279.2:317 X89101:317 CR450307:317 FJ200481:317 FJ373045:317 FJ373046:317 FM246457:317 FM246458:317 FM246459:317 Z47993:317 Z47994:317 Z47995:317 Z66556:317 Z70519:317 Z70520:317 ENST00000460510.5:400 ENST00000477270.5:460 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
| − | |distance= | + | |distance=7 |
| − | |distance_to_tss=- | + | |distance_to_tss=-246 |
|end=88990560 | |end=88990560 | ||
|end_of_center_position=88990553 | |end_of_center_position=88990553 | ||
|entrez_id=355 | |entrez_id=355 | ||
|gc_percent=0.626866 | |gc_percent=0.626866 | ||
| − | |gene_alias=ALPS1A | + | |gene_alias=ALPS1A{{!}}APO-1{{!}}APT1{{!}}CD95{{!}}FAS1{{!}}FASTM{{!}}TNFRSF6 |
|gene_description=Fas cell surface death receptor | |gene_description=Fas cell surface death receptor | ||
|gene_id=355 | |gene_id=355 | ||
| Line 25: | Line 25: | ||
|hgnc_mgi_id=HGNC:11920 | |hgnc_mgi_id=HGNC:11920 | ||
|nearest_ensembl=ENSG00000026103 | |nearest_ensembl=ENSG00000026103 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_028035 |
|nearest_refseq=NM_000043 | |nearest_refseq=NM_000043 | ||
|nearest_unigene=Hs.244139 | |nearest_unigene=Hs.244139 | ||
| − | |num_trans= | + | |num_trans=54 |
|species=human | |species=human | ||
|start=88990544 | |start=88990544 | ||
|start_of_center_position=88990552 | |start_of_center_position=88990552 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=BC012479 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_106093.1 | |tss_id=hg_106093.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 18:29, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 88990552 |
|---|---|
| End of the center position in the TSS region: | 88990553 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC012479 |
|---|---|
| Distance: | 7 |
| Num_trans: | 54 |
| All_trans: | BC012479:7 ENST00000355740.7:-14 KJ958564:-14 KM114217:-14 ENST00000612663.5:22 AK290978:71 X63717:97 AY495076:123 EU481974:123 M67454:123 ENST00000352159.8:127 ENST00000484444.5:171 ENST00000357339.6:218 ENST00000652046.1:238 NR_028036:238 NM_000043:238 NR_028034:238 NR_028033:238 NM_001320619:238 NM_152872:238 NM_152871:238 NR_028035:238 NR_135313:238 ENST00000488877.5:292 ENST00000494410.5:292 ENST00000479522.5:292 X83490:292 X83491:292 X83492:292 X83493:292 DQ894675:314 KJ890693:316 KR709616:316 KR709617:316 KR709618:316 KR709619:316 ENST00000492756.5:317 ENST00000355279.2:317 X89101:317 CR450307:317 FJ200481:317 FJ373045:317 FJ373046:317 FM246457:317 FM246458:317 FM246459:317 Z47993:317 Z47994:317 Z47995:317 Z66556:317 Z70519:317 Z70520:317 ENST00000460510.5:400 ENST00000477270.5:460 |
TATA-Box annotation
| Distance to TSS: | -246 |
|---|---|
| Nearest PromoterID: | NR_028035 |
| Entrez ID: | 355 |
| Nearest Unigene: | Hs.244139 |
| Nearest Refseq: | NM_000043 |
| Nearest Ensembl: | ENSG00000026103 |
| Gene Name: | Fas cell surface death receptor |
| Gene Alias: | ALPS1A|APO-1|APT1|CD95|FAS1|FASTM|TNFRSF6 |
| Gene Description: | Fas cell surface death receptor |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.626866 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
