Difference between revisions of "TSS:Hg 106107.1"
From referenceTSS
| Line 9: | Line 9: | ||
|ISG54= | |ISG54= | ||
|P54= | |P54= | ||
| − | |all_trans=ENST00000437032.1:-25 | + | |all_trans=ENST00000437032.1:-25 ENST00000679653.1:-32 ENST00000448897.1:-32 ENST00000680136.1:-56 ENST00000354541.7:-66 ENST00000681179.1:-95 ENST00000681850.1:-137 ENST00000638108.1:-137 ENST00000680546.1:-195 |
|chr=chr10 | |chr=chr10 | ||
|cig42= | |cig42= | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
|distance=-25 | |distance=-25 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-18207 |
|end=89283848 | |end=89283848 | ||
|end_of_center_position=89283840 | |end_of_center_position=89283840 | ||
|entrez_id=3433 | |entrez_id=3433 | ||
|gc_percent=0.467662 | |gc_percent=0.467662 | ||
| − | |gene_alias=G10P2 | + | |gene_alias=G10P2{{!}}GARG-39{{!}}IFI-54{{!}}IFI-54K{{!}}IFI54{{!}}IFIT-2{{!}}ISG-54 K{{!}}ISG-54K{{!}}ISG54{{!}}P54{{!}}cig42 |
|gene_description=interferon induced protein with tetratricopeptide repeats 2 | |gene_description=interferon induced protein with tetratricopeptide repeats 2 | ||
|gene_name=IFIT2 | |gene_name=IFIT2 | ||
| Line 27: | Line 27: | ||
|nearest_refseq=NM_001547 | |nearest_refseq=NM_001547 | ||
|nearest_unigene=Hs.437609 | |nearest_unigene=Hs.437609 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=human | |species=human | ||
|start=89283830 | |start=89283830 | ||
|start_of_center_position=89283839 | |start_of_center_position=89283839 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000437032 | + | |transcript_name=ENST00000437032.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_106107.1 | |tss_id=hg_106107.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Revision as of 18:30, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 89283839 |
|---|---|
| End of the center position in the TSS region: | 89283840 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000437032.1 |
|---|---|
| Distance: | -25 |
| Num_trans: | 9 |
| All_trans: | ENST00000437032.1:-25 ENST00000679653.1:-32 ENST00000448897.1:-32 ENST00000680136.1:-56 ENST00000354541.7:-66 ENST00000681179.1:-95 ENST00000681850.1:-137 ENST00000638108.1:-137 ENST00000680546.1:-195 |
TATA-Box annotation
| Distance to TSS: | -18207 |
|---|---|
| Nearest PromoterID: | NM_001547 |
| Entrez ID: | 3433 |
| Nearest Unigene: | Hs.437609 |
| Nearest Refseq: | NM_001547 |
| Nearest Ensembl: | ENSG00000119922 |
| Gene Name: | IFIT2 |
| Gene Alias: | G10P2|GARG-39|IFI-54|IFI-54K|IFI54|IFIT-2|ISG-54 K|ISG-54K|ISG54|P54|cig42 |
| Gene Description: | interferon induced protein with tetratricopeptide repeats 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.467662 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
