Difference between revisions of "TSS:Hg 106130.1"
From referenceTSS
| Line 7: | Line 7: | ||
|P60= | |P60= | ||
|RIG-G= | |RIG-G= | ||
| − | |all_trans=U52513:-334 AK312675:-348 AF083470:-351 | + | |all_trans=LF345455:166 MA581032:166 U52513:-334 LF345454:-338 MA581031:-338 AK312675:-348 ENST00000679923.1:-350 ENST00000680085.1:-350 ENST00000371818.9:-350 ENST00000680779.1:-350 NM_001549:-350 NM_001289758:-350 LF211307:-351 MA446884:-351 AF083470:-351 ENST00000681277.1:-365 ENST00000679438.1:-406 AK290427:-438 |
|chr=chr10 | |chr=chr10 | ||
|cig41= | |cig41= | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=166 |
| − | |distance_to_tss= | + | |distance_to_tss=353 |
|end=89328353 | |end=89328353 | ||
|end_of_center_position=89328350 | |end_of_center_position=89328350 | ||
|entrez_id=3437 | |entrez_id=3437 | ||
|gc_percent=0.502488 | |gc_percent=0.502488 | ||
| − | |gene_alias=CIG-49 | + | |gene_alias=CIG-49{{!}}GARG-49{{!}}IFI60{{!}}IFIT4{{!}}IRG2{{!}}ISG60{{!}}P60{{!}}RIG-G{{!}}cig41 |
|gene_description=interferon induced protein with tetratricopeptide repeats 3 | |gene_description=interferon induced protein with tetratricopeptide repeats 3 | ||
|gene_id=3437 | |gene_id=3437 | ||
| − | |gene_name= | + | |gene_name=IFIT3 |
|gene_source=HGNC:5411 | |gene_source=HGNC:5411 | ||
|gene_symbol=IFIT3 | |gene_symbol=IFIT3 | ||
| Line 27: | Line 27: | ||
|hgnc_mgi_id=HGNC:5411 | |hgnc_mgi_id=HGNC:5411 | ||
|nearest_ensembl=ENSG00000119917 | |nearest_ensembl=ENSG00000119917 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001289758 |
|nearest_refseq=NM_001549 | |nearest_refseq=NM_001549 | ||
|nearest_unigene=Hs.47338 | |nearest_unigene=Hs.47338 | ||
| − | |num_trans= | + | |num_trans=18 |
|species=human | |species=human | ||
|start=89328346 | |start=89328346 | ||
|start_of_center_position=89328349 | |start_of_center_position=89328349 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=LF345455 MA581032 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_106130.1 | |tss_id=hg_106130.1 | ||
Latest revision as of 18:30, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 89328349 |
|---|---|
| End of the center position in the TSS region: | 89328350 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF345455 MA581032 |
|---|---|
| Distance: | 166 |
| Num_trans: | 18 |
| All_trans: | LF345455:166 MA581032:166 U52513:-334 LF345454:-338 MA581031:-338 AK312675:-348 ENST00000679923.1:-350 ENST00000680085.1:-350 ENST00000371818.9:-350 ENST00000680779.1:-350 NM_001549:-350 NM_001289758:-350 LF211307:-351 MA446884:-351 AF083470:-351 ENST00000681277.1:-365 ENST00000679438.1:-406 AK290427:-438 |
TATA-Box annotation
| Distance to TSS: | 353 |
|---|---|
| Nearest PromoterID: | NM_001289758 |
| Entrez ID: | 3437 |
| Nearest Unigene: | Hs.47338 |
| Nearest Refseq: | NM_001549 |
| Nearest Ensembl: | ENSG00000119917 |
| Gene Name: | IFIT3 |
| Gene Alias: | CIG-49|GARG-49|IFI60|IFIT4|IRG2|ISG60|P60|RIG-G|cig41 |
| Gene Description: | interferon induced protein with tetratricopeptide repeats 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.502488 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
