Difference between revisions of "TSS:Hg 106298.1"
From referenceTSS
| Line 6: | Line 6: | ||
|ETL1= | |ETL1= | ||
|IB1099= | |IB1099= | ||
| − | |all_trans=ENST00000630047.2:-21 | + | |all_trans=ENST00000637925.1:0 ENST00000636155.1:0 ENST00000636946.1:-11 ENST00000630047.2:-21 ENST00000637689.1:-21 ENST00000637037.1:-21 ENST00000638049.1:-21 AK303956:-21 ENST00000636232.1:-24 AY358885:-29 ENST00000635953.1:-30 ENST00000637611.1:-30 ENST00000627699.1:43 ENST00000630184.2:-54 ENST00000636754.1:-56 ENST00000371418.9:-56 NM_005097:-56 AK309416:-57 AF055636:-71 AF473548:-71 ENST00000478763.2:-79 AK289706:100 BC022500:-107 CU692658:110 KJ892713:110 KR709465:110 KR709466:110 KR709467:110 KR709468:110 DQ892371:111 DQ895580:111 ENST00000371413.4:112 KU178468:112 KU178469:112 KU178470:112 KU178471:112 ENST00000630487.2:-117 ENST00000629035.2:-141 ENST00000627420.2:-152 NM_001308276:-183 NM_001308275:-183 NR_131777:-183 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=0 |
| − | |distance_to_tss= | + | |distance_to_tss=76 |
|end=93758033 | |end=93758033 | ||
|end_of_center_position=93758013 | |end_of_center_position=93758013 | ||
|entrez_id=9211 | |entrez_id=9211 | ||
|gc_percent=0.512438 | |gc_percent=0.512438 | ||
| − | |gene_alias=ADLTE | + | |gene_alias=ADLTE{{!}}ADPAEF{{!}}ADPEAF{{!}}EPITEMPIN{{!}}EPT{{!}}ETL1{{!}}IB1099 |
|gene_description=leucine rich glioma inactivated 1 | |gene_description=leucine rich glioma inactivated 1 | ||
|gene_id=9211 | |gene_id=9211 | ||
| − | |gene_name= | + | |gene_name=leucine rich glioma inactivated 1 |
|gene_source=HGNC:6572 | |gene_source=HGNC:6572 | ||
|gene_symbol=LGI1 | |gene_symbol=LGI1 | ||
| Line 28: | Line 28: | ||
|nearest_refseq=NM_005097 | |nearest_refseq=NM_005097 | ||
|nearest_unigene=Hs.533670 | |nearest_unigene=Hs.533670 | ||
| − | |num_trans= | + | |num_trans=42 |
|species=human | |species=human | ||
|start=93757991 | |start=93757991 | ||
|start_of_center_position=93758012 | |start_of_center_position=93758012 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000637925.1 ENST00000636155.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_106298.1 | |tss_id=hg_106298.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A1B0GTM5 A0A1B0GV33 |
}} | }} | ||
Revision as of 18:34, 15 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 93758012 |
|---|---|
| End of the center position in the TSS region: | 93758013 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000637925.1 ENST00000636155.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 42 |
| All_trans: | ENST00000637925.1:0 ENST00000636155.1:0 ENST00000636946.1:-11 ENST00000630047.2:-21 ENST00000637689.1:-21 ENST00000637037.1:-21 ENST00000638049.1:-21 AK303956:-21 ENST00000636232.1:-24 AY358885:-29 ENST00000635953.1:-30 ENST00000637611.1:-30 ENST00000627699.1:43 ENST00000630184.2:-54 ENST00000636754.1:-56 ENST00000371418.9:-56 NM_005097:-56 AK309416:-57 AF055636:-71 AF473548:-71 ENST00000478763.2:-79 AK289706:100 BC022500:-107 CU692658:110 KJ892713:110 KR709465:110 KR709466:110 KR709467:110 KR709468:110 DQ892371:111 DQ895580:111 ENST00000371413.4:112 KU178468:112 KU178469:112 KU178470:112 KU178471:112 ENST00000630487.2:-117 ENST00000629035.2:-141 ENST00000627420.2:-152 NM_001308276:-183 NM_001308275:-183 NR_131777:-183 |
TATA-Box annotation
| Distance to TSS: | 76 |
|---|---|
| Nearest PromoterID: | NM_005097 |
| Entrez ID: | 9211 |
| Nearest Unigene: | Hs.533670 |
| Nearest Refseq: | NM_005097 |
| Nearest Ensembl: | ENSG00000108231 |
| Gene Name: | leucine rich glioma inactivated 1 |
| Gene Alias: | ADLTE|ADPAEF|ADPEAF|EPITEMPIN|EPT|ETL1|IB1099 |
| Gene Description: | leucine rich glioma inactivated 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.512438 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
