Difference between revisions of "TSS:Hg 232138.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|TIAR= | |TIAR= | ||
| − | |all_trans= | + | |all_trans=ENST00000611527.1:-18 ENST00000369056.5:28 X56191:28 KP192323:-32 KP192324:-32 KP192325:-32 KP192326:-32 KP192327:-32 KP192328:-32 KP192329:-32 KP192330:-32 KP192331:-32 ENST00000346997.6:40 ENST00000351936.10:40 Z71929:40 M55614:40 KJ896817:49 KR712030:49 KR712031:49 KR712032:49 KR712033:49 AB587574:50 AB084153:52 EF057068:52 AB821309:52 EU826598:52 EU826601:52 EU826599:52 EU826600:52 ENST00000369061.8:-98 NM_001144914:-98 NM_023029:-98 NM_001144913:-98 ENST00000613324.4:105 ENST00000491111.1:-284 NM_001144916:-389 AK308621:-389 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
| − | |distance=- | + | |distance=-18 |
|distance_to_tss=3539 | |distance_to_tss=3539 | ||
|end=119593490 | |end=119593490 | ||
| Line 10: | Line 10: | ||
|entrez_id=7073 | |entrez_id=7073 | ||
|gc_percent=0.328358 | |gc_percent=0.328358 | ||
| − | |gene_alias=TCBP | + | |gene_alias=TCBP{{!}}TIAR |
|gene_description=TIA1 cytotoxic granule associated RNA binding protein like 1 | |gene_description=TIA1 cytotoxic granule associated RNA binding protein like 1 | ||
| − | |gene_id= | + | |gene_id=2263 |
| − | |gene_name= | + | |gene_name=fibroblast growth factor receptor 2 |
| − | |gene_source=HGNC: | + | |gene_source=HGNC:3689 |
| − | |gene_symbol= | + | |gene_symbol=FGFR2 |
| − | |gene_synonyms= | + | |gene_synonyms=CD332 CEK3 ECT1 K-SAM TK14 TK25 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id=HGNC: | + | |hgnc_mgi_id=HGNC:3689 |
|nearest_ensembl=ENSG00000151923 | |nearest_ensembl=ENSG00000151923 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001323969 |
|nearest_refseq=NM_003252 | |nearest_refseq=NM_003252 | ||
|nearest_unigene=Hs.501203 | |nearest_unigene=Hs.501203 | ||
| − | |num_trans= | + | |num_trans=37 |
|species=human | |species=human | ||
|start=119593489 | |start=119593489 | ||
|start_of_center_position=121593868 | |start_of_center_position=121593868 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=ENST00000611527.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_232138.1 | |tss_id=hg_232138.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A087X2D1 |
}} | }} | ||
Revision as of 12:17, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 121593868 |
|---|---|
| End of the center position in the TSS region: | 121593869 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000611527.1 |
|---|---|
| Distance: | -18 |
| Num_trans: | 37 |
| All_trans: | ENST00000611527.1:-18 ENST00000369056.5:28 X56191:28 KP192323:-32 KP192324:-32 KP192325:-32 KP192326:-32 KP192327:-32 KP192328:-32 KP192329:-32 KP192330:-32 KP192331:-32 ENST00000346997.6:40 ENST00000351936.10:40 Z71929:40 M55614:40 KJ896817:49 KR712030:49 KR712031:49 KR712032:49 KR712033:49 AB587574:50 AB084153:52 EF057068:52 AB821309:52 EU826598:52 EU826601:52 EU826599:52 EU826600:52 ENST00000369061.8:-98 NM_001144914:-98 NM_023029:-98 NM_001144913:-98 ENST00000613324.4:105 ENST00000491111.1:-284 NM_001144916:-389 AK308621:-389 |
TATA-Box annotation
| Distance to TSS: | 3539 |
|---|---|
| Nearest PromoterID: | NM_001323969 |
| Entrez ID: | 7073 |
| Nearest Unigene: | Hs.501203 |
| Nearest Refseq: | NM_003252 |
| Nearest Ensembl: | ENSG00000151923 |
| Gene Name: | fibroblast growth factor receptor 2 |
| Gene Alias: | TCBP|TIAR |
| Gene Description: | TIA1 cytotoxic granule associated RNA binding protein like 1 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.328358 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
