Difference between revisions of "TSS:Hg 184194.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|P542= | |P542= | ||
| − | |all_trans=BC103753:25 AK299766:31 ENST00000413297.5 | + | |all_trans=BC103753:25 ENST00000246194.8:31 NM_007367:31 NM_016732:31 AK299766:31 ENST00000413297.5:-33 AF148457:46 ENST00000333552.9:73 AK226085:-82 AK222915:86 ENST00000448364.5:-155 L38696:168 BC105018:177 ENST00000375114.7:-189 AK291079:195 AK291054:201 |
|chr=chr20 | |chr=chr20 | ||
|cpg_percent=0.145 | |cpg_percent=0.145 | ||
|distance=25 | |distance=25 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-54 |
|end=33993880 | |end=33993880 | ||
|end_of_center_position=33993858 | |end_of_center_position=33993858 | ||
|entrez_id=22913 | |entrez_id=22913 | ||
|gc_percent=0.78607 | |gc_percent=0.78607 | ||
| − | |gene_alias=HNRPCL2 | + | |gene_alias=HNRPCL2{{!}}P542 |
|gene_description=RALY heterogeneous nuclear ribonucleoprotein | |gene_description=RALY heterogeneous nuclear ribonucleoprotein | ||
|gene_id=22913 | |gene_id=22913 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=HGNC:15921 | |hgnc_mgi_id=HGNC:15921 | ||
|nearest_ensembl=ENSG00000125970 | |nearest_ensembl=ENSG00000125970 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_016732 |
|nearest_refseq=NM_007367 | |nearest_refseq=NM_007367 | ||
|nearest_unigene=Hs.136947 | |nearest_unigene=Hs.136947 | ||
| − | |num_trans= | + | |num_trans=16 |
|species=human | |species=human | ||
|start=33993834 | |start=33993834 | ||
Revision as of 00:34, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 33993857 |
|---|---|
| End of the center position in the TSS region: | 33993858 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC103753 |
|---|---|
| Distance: | 25 |
| Num_trans: | 16 |
| All_trans: | BC103753:25 ENST00000246194.8:31 NM_007367:31 NM_016732:31 AK299766:31 ENST00000413297.5:-33 AF148457:46 ENST00000333552.9:73 AK226085:-82 AK222915:86 ENST00000448364.5:-155 L38696:168 BC105018:177 ENST00000375114.7:-189 AK291079:195 AK291054:201 |
TATA-Box annotation
| Distance to TSS: | -54 |
|---|---|
| Nearest PromoterID: | NM_016732 |
| Entrez ID: | 22913 |
| Nearest Unigene: | Hs.136947 |
| Nearest Refseq: | NM_007367 |
| Nearest Ensembl: | ENSG00000125970 |
| Gene Name: | RALY heterogeneous nuclear ribonucleoprotein |
| Gene Alias: | HNRPCL2|P542 |
| Gene Description: | RALY heterogeneous nuclear ribonucleoprotein |
| Gene Type: | protein-coding |
| CpG%: | 0.145 |
| GC%: | 0.78607 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
