Difference between revisions of "TSS:Mm 99406.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=BC030867:0 BC108338:0 AK029811:-7 ENSMUST00000133930.7:-10 ENSMUST00000100392.4:-10 NM_153544:-10 | + | |all_trans=BC030867:0 BC108338:0 AK029811:-7 ENSMUST00000133930.7:-10 ENSMUST00000100392.4:-10 NM_153544:-10 LF198916:-14 MA434493:-14 BC085317:38 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
| Line 12: | Line 12: | ||
|gene_description=cDNA sequence BC030867 | |gene_description=cDNA sequence BC030867 | ||
|gene_id=217216 | |gene_id=217216 | ||
| − | |gene_name= | + | |gene_name=homologous recombination factor with OB-fold |
|gene_source=MGI:2387601 | |gene_source=MGI:2387601 | ||
| − | |gene_symbol= | + | |gene_symbol=Hrob |
| − | |gene_synonyms= | + | |gene_synonyms=BC030867 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:2387601 | |hgnc_mgi_id=MGI:2387601 | ||
| Line 27: | Line 27: | ||
|start_of_center_position=102248914 | |start_of_center_position=102248914 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-65(TTCCCTTTAAGG,-,0.00),-64(TCCCTTTAAGGG,-,0.00),-63(CCCTTTAAGGGG,+,0.00),-63(CCCTTTAAGGGG,-,0.00),-62(CCTTTAAGGGGG,+,0.00),29(CGGTCTTAAAGA,-,0.00) |
|transcript_name=BC030867 BC108338 | |transcript_name=BC030867 BC108338 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 03:50, 22 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 102248914 |
|---|---|
| End of the center position in the TSS region: | 102248915 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | BC030867 BC108338 |
|---|---|
| Distance: | 0 |
| Num_trans: | 9 |
| All_trans: | BC030867:0 BC108338:0 AK029811:-7 ENSMUST00000133930.7:-10 ENSMUST00000100392.4:-10 NM_153544:-10 LF198916:-14 MA434493:-14 BC085317:38 |
TATA-Box annotation
| Distance to TSS: | 32 |
|---|---|
| Nearest PromoterID: | NM_153544 |
| Entrez ID: | 217216 |
| Nearest Unigene: | Mm.247335 |
| Nearest Refseq: | NM_153544 |
| Nearest Ensembl: | ENSMUSG00000034773 |
| Gene Name: | homologous recombination factor with OB-fold |
| Gene Alias: | - |
| Gene Description: | cDNA sequence BC030867 |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.542289 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -65(TTCCCTTTAAGG,-,0.00),-64(TCCCTTTAAGGG,-,0.00),-63(CCCTTTAAGGGG,+,0.00),-63(CCCTTTAAGGGG,-,0.00),-62(CCTTTAAGGGGG,+,0.00),29(CGGTCTTAAAGA,-,0.00) |
