Difference between revisions of "TSS:Mm 50292.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=AF136441:-234 AF176910:-268 ENSMUST00000143941.2:-315 AK040053:-315 AK165978:-317 AK147004:-361 | + | |all_trans=NM_001355550:38 AF136441:-234 AF176910:-268 ENSMUST00000143941.2:-315 AK040053:-315 AK165978:-317 LF283224:-327 MA518801:-327 AK147004:-361 BC029260:-379 LF204858:-380 MA440435:-380 ENSMUST00000031697.8:-383 NM_012042:-384 LF283223:-416 MA518800:-416 |
|chr=chr6 | |chr=chr6 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
| − | |distance= | + | |distance=38 |
| − | |distance_to_tss= | + | |distance_to_tss=-46 |
|end=47454719 | |end=47454719 | ||
|end_of_center_position=47454711 | |end_of_center_position=47454711 | ||
|entrez_id=26965 | |entrez_id=26965 | ||
|gc_percent=0.766169 | |gc_percent=0.766169 | ||
| − | |gene_alias=- | + | |gene_alias=Cul-1 |
|gene_description=cullin 1 | |gene_description=cullin 1 | ||
|gene_id=26965 | |gene_id=26965 | ||
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|hgnc_mgi_id=MGI:1349658 | |hgnc_mgi_id=MGI:1349658 | ||
|nearest_ensembl=ENSMUSG00000029686 | |nearest_ensembl=ENSMUSG00000029686 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001355550 |
|nearest_refseq=NM_012042 | |nearest_refseq=NM_012042 | ||
|nearest_unigene=Mm.87611 | |nearest_unigene=Mm.87611 | ||
| − | |num_trans= | + | |num_trans=16 |
|species=mouse | |species=mouse | ||
|start=47454702 | |start=47454702 | ||
|start_of_center_position=47454710 | |start_of_center_position=47454710 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=NM_001355550 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_50292.1 | |tss_id=mm_50292.1 | ||
Revision as of 09:14, 21 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 47454710 |
|---|---|
| End of the center position in the TSS region: | 47454711 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | NM_001355550 |
|---|---|
| Distance: | 38 |
| Num_trans: | 16 |
| All_trans: | NM_001355550:38 AF136441:-234 AF176910:-268 ENSMUST00000143941.2:-315 AK040053:-315 AK165978:-317 LF283224:-327 MA518801:-327 AK147004:-361 BC029260:-379 LF204858:-380 MA440435:-380 ENSMUST00000031697.8:-383 NM_012042:-384 LF283223:-416 MA518800:-416 |
TATA-Box annotation
| Distance to TSS: | -46 |
|---|---|
| Nearest PromoterID: | NM_001355550 |
| Entrez ID: | 26965 |
| Nearest Unigene: | Mm.87611 |
| Nearest Refseq: | NM_012042 |
| Nearest Ensembl: | ENSMUSG00000029686 |
| Gene Name: | cullin 1 |
| Gene Alias: | Cul-1 |
| Gene Description: | cullin 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.766169 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
