Difference between revisions of "TSS:Hg 187107.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|SDP1= | |SDP1= | ||
| − | |all_trans=ENST00000615116.1:-338 NM_016558:-338 | + | |all_trans=ENST00000615116.1:-338 NM_016558:-338 AF207829:493 ENST00000305978.7:497 NM_033630:497 |
|chr=chr20 | |chr=chr20 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
| Line 10: | Line 10: | ||
|entrez_id=51282 | |entrez_id=51282 | ||
|gc_percent=0.537313 | |gc_percent=0.537313 | ||
| − | |gene_alias=RAZ1 | + | |gene_alias=RAZ1{{!}}SDP1 |
|gene_description=SCAN domain containing 1 | |gene_description=SCAN domain containing 1 | ||
|gene_id=51282 | |gene_id=51282 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_016558 | |nearest_refseq=NM_016558 | ||
|nearest_unigene=Hs.584909 | |nearest_unigene=Hs.584909 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=human | |species=human | ||
|start=35954998 | |start=35954998 | ||
|start_of_center_position=35955009 | |start_of_center_position=35955009 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000615116.1 NM_016558 | + | |transcript_name=ENST00000615116.1 NM_016558 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_187107.1 | |tss_id=hg_187107.1 | ||
Revision as of 01:42, 17 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 35955009 |
|---|---|
| End of the center position in the TSS region: | 35955010 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000615116.1 NM_016558 |
|---|---|
| Distance: | -338 |
| Num_trans: | 5 |
| All_trans: | ENST00000615116.1:-338 NM_016558:-338 AF207829:493 ENST00000305978.7:497 NM_033630:497 |
TATA-Box annotation
| Distance to TSS: | 349 |
|---|---|
| Nearest PromoterID: | NM_016558 |
| Entrez ID: | 51282 |
| Nearest Unigene: | Hs.584909 |
| Nearest Refseq: | NM_016558 |
| Nearest Ensembl: | ENSG00000171222 |
| Gene Name: | SCAN domain containing 1 |
| Gene Alias: | RAZ1|SDP1 |
| Gene Description: | SCAN domain containing 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.537313 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
