Difference between revisions of "TSS:Hg 184619.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=AK023614:-12 AK001840:12 | + | |all_trans=NR_145524:-12 NR_145525:-12 AK023614:-12 AK001840:12 |
|chr=chr20 | |chr=chr20 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
|distance=-12 | |distance=-12 | ||
| − | |distance_to_tss= | + | |distance_to_tss=18 |
|end=40980737 | |end=40980737 | ||
|end_of_center_position=40980731 | |end_of_center_position=40980731 | ||
| Line 16: | Line 16: | ||
|gene_symbol=LOC100128988 | |gene_symbol=LOC100128988 | ||
|gene_synonyms= | |gene_synonyms= | ||
| − | |gene_type= | + | |gene_type=ncRNA |
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |nearest_ensembl= | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_145524 |
| − | |nearest_refseq= | + | |nearest_refseq=NR_145524 |
|nearest_unigene=Hs.636443 | |nearest_unigene=Hs.636443 | ||
|num_trans=4 | |num_trans=4 | ||
| Line 27: | Line 27: | ||
|start_of_center_position=40980730 | |start_of_center_position=40980730 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=AK023614 | + | |transcript_name=NR_145524 NR_145525 AK023614 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_184619.1 | |tss_id=hg_184619.1 | ||
Revision as of 00:44, 17 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 40980730 |
|---|---|
| End of the center position in the TSS region: | 40980731 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NR_145524 NR_145525 AK023614 |
|---|---|
| Distance: | -12 |
| Num_trans: | 4 |
| All_trans: | NR_145524:-12 NR_145525:-12 AK023614:-12 AK001840:12 |
TATA-Box annotation
| Distance to TSS: | 18 |
|---|---|
| Nearest PromoterID: | NR_145524 |
| Entrez ID: | 100128988 |
| Nearest Unigene: | Hs.636443 |
| Nearest Refseq: | NR_145524 |
| Nearest Ensembl: | |
| Gene Name: | uncharacterized LOC100128988 |
| Gene Alias: | - |
| Gene Description: | uncharacterized LOC100128988 |
| Gene Type: | ncRNA |
| CpG%: | 0.015 |
| GC%: | 0.487562 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
