Difference between revisions of "TSS:Mm 50620.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|Pals2= | |Pals2= | ||
| − | |all_trans= | + | |all_trans=AK170481:0 AK164549:0 ENSMUST00000167628.1:-35 NM_001361248:-35 NM_001361247:-35 ENSMUST00000171601.7:-488 |
|chr=chr6 | |chr=chr6 | ||
|cpg_percent=0.075 | |cpg_percent=0.075 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=50 |
|end=50110926 | |end=50110926 | ||
|end_of_center_position=50110911 | |end_of_center_position=50110911 | ||
|entrez_id=56524 | |entrez_id=56524 | ||
|gc_percent=0.597015 | |gc_percent=0.597015 | ||
| − | |gene_alias=P55t | + | |gene_alias=P55t{{!}}Pals2 |
| − | |gene_description= | + | |gene_description=membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6) |
|gene_id=56524 | |gene_id=56524 | ||
| − | |gene_name= | + | |gene_name=membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6) |
|gene_source=MGI:1927340 | |gene_source=MGI:1927340 | ||
|gene_symbol=Mpp6 | |gene_symbol=Mpp6 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=MGI:1927340 | |hgnc_mgi_id=MGI:1927340 | ||
|nearest_ensembl=ENSMUSG00000038388 | |nearest_ensembl=ENSMUSG00000038388 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001361247 |
|nearest_refseq=NM_008016 | |nearest_refseq=NM_008016 | ||
|nearest_unigene=Mm.41288 | |nearest_unigene=Mm.41288 | ||
| − | |num_trans= | + | |num_trans=6 |
|species=mouse | |species=mouse | ||
|start=50110894 | |start=50110894 | ||
|start_of_center_position=50110910 | |start_of_center_position=50110910 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=AK170481 AK164549 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_50620.1 | |tss_id=mm_50620.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q3TPA2 | + | |uniprot_id=Q3TPA2 |
}} | }} | ||
Revision as of 09:21, 21 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 50110910 |
|---|---|
| End of the center position in the TSS region: | 50110911 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AK170481 AK164549 |
|---|---|
| Distance: | 0 |
| Num_trans: | 6 |
| All_trans: | AK170481:0 AK164549:0 ENSMUST00000167628.1:-35 NM_001361248:-35 NM_001361247:-35 ENSMUST00000171601.7:-488 |
TATA-Box annotation
| Distance to TSS: | 50 |
|---|---|
| Nearest PromoterID: | NM_001361247 |
| Entrez ID: | 56524 |
| Nearest Unigene: | Mm.41288 |
| Nearest Refseq: | NM_008016 |
| Nearest Ensembl: | ENSMUSG00000038388 |
| Gene Name: | membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6) |
| Gene Alias: | P55t|Pals2 |
| Gene Description: | membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6) |
| Gene Type: | protein-coding |
| CpG%: | 0.075 |
| GC%: | 0.597015 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
