Difference between revisions of "TSS:Mm 163249.1"
From referenceTSS
| Line 5: | Line 5: | ||
|D330027A14Rik= | |D330027A14Rik= | ||
|F630025I20Rik= | |F630025I20Rik= | ||
| − | |all_trans=AK084665:-260 ENSMUST00000103068.9:280 NM_001166685:280 NM_177088 | + | |all_trans=AK084665:-260 ENSMUST00000103068.9:280 NM_001166685:280 NM_177088:280 AK089185:-280 ENSMUST00000018516.10:303 AK076400:303 AK165351:313 BC116308:314 BC116309:314 ENSMUST00000130019.1:315 BC090675:322 AK052705:353 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
|distance=-260 | |distance=-260 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-38 |
|end=106788972 | |end=106788972 | ||
|end_of_center_position=106788945 | |end_of_center_position=106788945 | ||
| − | |entrez_id= | + | |entrez_id=13207 |
|gc_percent=0.621891 | |gc_percent=0.621891 | ||
| − | |gene_alias= | + | |gene_alias=2600009A06Rik{{!}}G17P1{{!}}HUMP68{{!}}Hlr1{{!}}p68 |
| − | |gene_description= | + | |gene_description=DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 |
|gene_id=320162 | |gene_id=320162 | ||
|gene_name=centrosomal protein 95 | |gene_name=centrosomal protein 95 | ||
| Line 23: | Line 23: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:2443502 | |hgnc_mgi_id=MGI:2443502 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSMUSG00000020719 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001355676 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_007840 |
| − | |nearest_unigene=Mm. | + | |nearest_unigene=Mm.491096 |
| − | |num_trans= | + | |num_trans=13 |
|species=mouse | |species=mouse | ||
|start=106788917 | |start=106788917 | ||
Revision as of 16:40, 20 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 106788944 |
|---|---|
| End of the center position in the TSS region: | 106788945 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK084665 |
|---|---|
| Distance: | -260 |
| Num_trans: | 13 |
| All_trans: | AK084665:-260 ENSMUST00000103068.9:280 NM_001166685:280 NM_177088:280 AK089185:-280 ENSMUST00000018516.10:303 AK076400:303 AK165351:313 BC116308:314 BC116309:314 ENSMUST00000130019.1:315 BC090675:322 AK052705:353 |
TATA-Box annotation
| Distance to TSS: | -38 |
|---|---|
| Nearest PromoterID: | NM_001355676 |
| Entrez ID: | 13207 |
| Nearest Unigene: | Mm.491096 |
| Nearest Refseq: | NM_007840 |
| Nearest Ensembl: | ENSMUSG00000020719 |
| Gene Name: | centrosomal protein 95 |
| Gene Alias: | 2600009A06Rik|G17P1|HUMP68|Hlr1|p68 |
| Gene Description: | DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.621891 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
