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Difference between revisions of "TSS:Mm 99850.1"

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Line 2: Line 2:
 
|AU043124=
 
|AU043124=
 
|Galpha13=
 
|Galpha13=
|all_trans=M63660:-10 ENSMUST00000106702.3:-25 ENSMUST00000020930.13:-25 AK011851:-25 AK149766:36 NM_010303:-62 uc007mcd.1:-62 uc007mce.1:-62 BC057665:72 BC049898:212
+
|all_trans=M63660:-10 ENSMUST00000106702.3:-25 ENSMUST00000020930.13:-25 NM_001359034:-25 AK011851:-25 AK149766:36 NM_010303:-62 BC057665:72 BC049898:212
 
|chr=chr11
 
|chr=chr11
 
|cpg_percent=0.13
 
|cpg_percent=0.13
 
|distance=-10
 
|distance=-10
|distance_to_tss=68
+
|distance_to_tss=31
 
|end=109362868
 
|end=109362868
 
|end_of_center_position=109362862
 
|end_of_center_position=109362862
 
|entrez_id=14674
 
|entrez_id=14674
 
|gc_percent=0.825871
 
|gc_percent=0.825871
|gene_alias=AU024132
+
|gene_alias=AU024132{{!}}AU043124{{!}}Galpha13
|gene_description="guanine nucleotide binding protein, alpha 13"
+
|gene_description=guanine nucleotide binding protein, alpha 13
 
|gene_id=14674
 
|gene_id=14674
|gene_name="guanine nucleotide binding protein, alpha 13"
+
|gene_name=guanine nucleotide binding protein, alpha 13
 
|gene_source=MGI:95768
 
|gene_source=MGI:95768
 
|gene_symbol=Gna13
 
|gene_symbol=Gna13
Line 21: Line 21:
 
|hgnc_mgi_id=MGI:95768
 
|hgnc_mgi_id=MGI:95768
 
|nearest_ensembl=ENSMUSG00000020611
 
|nearest_ensembl=ENSMUSG00000020611
|nearest_promoter_id=NM_010303
+
|nearest_promoter_id=NM_001359034
 
|nearest_refseq=NM_010303
 
|nearest_refseq=NM_010303
 
|nearest_unigene=Mm.193925
 
|nearest_unigene=Mm.193925
|num_trans=10
+
|num_trans=9
 
|species=mouse
 
|species=mouse
 
|start=109362855
 
|start=109362855

Revision as of 04:00, 22 June 2021

Basic information about the TSS


TSS ID:mm_99850.1
Species:mouse
Chr:chr11
TSS Classification:yes
Start:109362855
End:109362868
Strand:+
TSS Score:1
Start of the center position in the TSS region:109362861
End of the center position in the TSS region:109362862



Gene and protein annotation


Transcript_name:M63660
Distance:-10
GeneID:14674
HGNC/MGI_ID:MGI:95768
UniProt_ID:
Gene_name:guanine nucleotide binding protein, alpha 13
Gene_symbol:Gna13
Gene_synonyms:Galpha13
Gene_source:MGI:95768



Transcript annotation


Transcript_name:M63660
Distance:-10
Num_trans:9
All_trans:M63660:-10 ENSMUST00000106702.3:-25 ENSMUST00000020930.13:-25 NM_001359034:-25 AK011851:-25 AK149766:36 NM_010303:-62 BC057665:72 BC049898:212



TATA-Box annotation


Distance to TSS:31
Nearest PromoterID:NM_001359034
Entrez ID:14674
Nearest Unigene:Mm.193925
Nearest Refseq:NM_010303
Nearest Ensembl:ENSMUSG00000020611
Gene Name:guanine nucleotide binding protein, alpha 13
Gene Alias:AU024132|AU043124|Galpha13
Gene Description:guanine nucleotide binding protein, alpha 13
Gene Type:protein-coding
CpG%:0.13
GC%:0.825871
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):