Difference between revisions of "TSS:Mm 99899.1"
From referenceTSS
| Line 3: | Line 3: | ||
|Tse-1= | |Tse-1= | ||
|Tse1= | |Tse1= | ||
| − | |all_trans= | + | |all_trans=NM_001373913:0 AK005039:0 AK053918:0 AK145797:0 AK051068:0 AK147188:0 AK083383:0 AK145860:0 AK027916:0 BC003461:0 ENSMUST00000049527.6:-5 NM_001313976:-64 NM_001313975:-64 NM_001362677:339 ENSMUST00000106676.7:-351 BC005697:-368 NM_001373912:-384 AK151124:-384 AK153227:-384 AK146380:-413 AK150427:-417 AK049832:-418 HQ412668:-485 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=102 |
|end=109651003 | |end=109651003 | ||
|end_of_center_position=109650965 | |end_of_center_position=109650965 | ||
|entrez_id=19084 | |entrez_id=19084 | ||
|gc_percent=0.711443 | |gc_percent=0.711443 | ||
| − | |gene_alias=1300018C22Rik | + | |gene_alias=1300018C22Rik{{!}}RIalpha{{!}}Tse-1{{!}}Tse1 |
| − | |gene_description= | + | |gene_description=protein kinase, cAMP dependent regulatory, type I, alpha |
|gene_id=19084 | |gene_id=19084 | ||
| − | |gene_name= | + | |gene_name=protein kinase, cAMP dependent regulatory, type I, alpha |
|gene_source=MGI:104878 | |gene_source=MGI:104878 | ||
|gene_symbol=Prkar1a | |gene_symbol=Prkar1a | ||
| Line 30: | Line 30: | ||
|start_of_center_position=109650964 | |start_of_center_position=109650964 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=NM_001373913 AK005039 AK053918 AK145797 AK051068 AK147188 AK083383 AK145860 AK027916 BC003461 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_99899.1 | |tss_id=mm_99899.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q8C3Z4 | + | |uniprot_id=Q8C3Z4 |
}} | }} | ||
Revision as of 04:01, 22 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 109650964 |
|---|---|
| End of the center position in the TSS region: | 109650965 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_001373913 AK005039 AK053918 AK145797 AK051068 AK147188 AK083383 AK145860 AK027916 BC003461 |
|---|---|
| Distance: | 0 |
| Num_trans: | 23 |
| All_trans: | NM_001373913:0 AK005039:0 AK053918:0 AK145797:0 AK051068:0 AK147188:0 AK083383:0 AK145860:0 AK027916:0 BC003461:0 ENSMUST00000049527.6:-5 NM_001313976:-64 NM_001313975:-64 NM_001362677:339 ENSMUST00000106676.7:-351 BC005697:-368 NM_001373912:-384 AK151124:-384 AK153227:-384 AK146380:-413 AK150427:-417 AK049832:-418 HQ412668:-485 |
TATA-Box annotation
| Distance to TSS: | 102 |
|---|---|
| Nearest PromoterID: | NM_001313976 |
| Entrez ID: | 19084 |
| Nearest Unigene: | Mm.30039 |
| Nearest Refseq: | NM_021880 |
| Nearest Ensembl: | ENSMUSG00000020612 |
| Gene Name: | protein kinase, cAMP dependent regulatory, type I, alpha |
| Gene Alias: | 1300018C22Rik|RIalpha|Tse-1|Tse1 |
| Gene Description: | protein kinase, cAMP dependent regulatory, type I, alpha |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.711443 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
