Difference between revisions of "TSS:Mm 99950.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|AV220920= | |AV220920= | ||
| − | |all_trans=ENSMUST00000000579.2:0 NM_011448 | + | |all_trans=ENSMUST00000000579.2:0 NM_011448:0 AK049986:0 AK031516:0 AK030187:0 BC024958:0 BC023808:0 BC023796:0 BC023953:0 AK220197:0 BC034264:34 AF421878:337 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| Line 10: | Line 10: | ||
|entrez_id=20682 | |entrez_id=20682 | ||
|gc_percent=0.512438 | |gc_percent=0.512438 | ||
| − | |gene_alias=2010306G03Rik | + | |gene_alias=2010306G03Rik{{!}}AV220920{{!}}mKIAA4243 |
|gene_description=SRY (sex determining region Y)-box 9 | |gene_description=SRY (sex determining region Y)-box 9 | ||
|gene_id=20682 | |gene_id=20682 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_011448 | |nearest_refseq=NM_011448 | ||
|nearest_unigene=Mm.286407 | |nearest_unigene=Mm.286407 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=mouse | |species=mouse | ||
|start=112782182 | |start=112782182 | ||
|start_of_center_position=112782215 | |start_of_center_position=112782215 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENSMUST00000000579.2 NM_011448 | + | |transcript_name=ENSMUST00000000579.2 NM_011448 AK049986 AK031516 AK030187 BC024958 BC023808 BC023796 BC023953 AK220197 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_99950.1 | |tss_id=mm_99950.1 | ||
Revision as of 04:03, 22 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 112782215 |
|---|---|
| End of the center position in the TSS region: | 112782216 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000000579.2 NM_011448 AK049986 AK031516 AK030187 BC024958 BC023808 BC023796 BC023953 AK220197 |
|---|---|
| Distance: | 0 |
| Num_trans: | 12 |
| All_trans: | ENSMUST00000000579.2:0 NM_011448:0 AK049986:0 AK031516:0 AK030187:0 BC024958:0 BC023808:0 BC023796:0 BC023953:0 AK220197:0 BC034264:34 AF421878:337 |
TATA-Box annotation
| Distance to TSS: | 5 |
|---|---|
| Nearest PromoterID: | NM_011448 |
| Entrez ID: | 20682 |
| Nearest Unigene: | Mm.286407 |
| Nearest Refseq: | NM_011448 |
| Nearest Ensembl: | ENSMUSG00000000567 |
| Gene Name: | SRY (sex determining region Y)-box 9 |
| Gene Alias: | 2010306G03Rik|AV220920|mKIAA4243 |
| Gene Description: | SRY (sex determining region Y)-box 9 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.512438 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
