Difference between revisions of "TSS:Mm 99959.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|Ldlb= | |Ldlb= | ||
| − | |all_trans=NM_013581 | + | |all_trans=NM_013581:0 AK162971:0 AK034636:0 AK159497:0 AK220387:0 AK171574:0 AK152464:0 AF109377:0 BC063056:0 ENSMUST00000063776.13:-192 BC049541:-192 ENSMUST00000018805.14:-351 AK158507:-351 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| Line 10: | Line 10: | ||
|entrez_id=16834 | |entrez_id=16834 | ||
|gc_percent=0.716418 | |gc_percent=0.716418 | ||
| − | |gene_alias=6030445I15 | + | |gene_alias=6030445I15{{!}}Ldlb{{!}}mKIAA1381 |
|gene_description=component of oligomeric golgi complex 1 | |gene_description=component of oligomeric golgi complex 1 | ||
|gene_id=16834 | |gene_id=16834 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_013581 | |nearest_refseq=NM_013581 | ||
|nearest_unigene=Mm.261620 | |nearest_unigene=Mm.261620 | ||
| − | |num_trans= | + | |num_trans=13 |
|species=mouse | |species=mouse | ||
|start=113649519 | |start=113649519 | ||
|start_of_center_position=113649539 | |start_of_center_position=113649539 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=NM_013581 | + | |transcript_name=NM_013581 AK162971 AK034636 AK159497 AK220387 AK171574 AK152464 AF109377 BC063056 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_99959.1 | |tss_id=mm_99959.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q3TAY0 Q3TR89 Q3TWY6 Q3U7X8 Q5DTY3 | + | |uniprot_id=Q3TAY0 Q3TR89 Q3TWY6 Q3U7X8 Q5DTY3 Q9Z160 |
}} | }} | ||
Revision as of 04:03, 22 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 113649539 |
|---|---|
| End of the center position in the TSS region: | 113649540 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | NM_013581 AK162971 AK034636 AK159497 AK220387 AK171574 AK152464 AF109377 BC063056 |
|---|---|
| Distance: | 0 |
| Num_trans: | 13 |
| All_trans: | NM_013581:0 AK162971:0 AK034636:0 AK159497:0 AK220387:0 AK171574:0 AK152464:0 AF109377:0 BC063056:0 ENSMUST00000063776.13:-192 BC049541:-192 ENSMUST00000018805.14:-351 AK158507:-351 |
TATA-Box annotation
| Distance to TSS: | 11 |
|---|---|
| Nearest PromoterID: | NM_013581 |
| Entrez ID: | 16834 |
| Nearest Unigene: | Mm.261620 |
| Nearest Refseq: | NM_013581 |
| Nearest Ensembl: | ENSMUSG00000018661 |
| Gene Name: | component of oligomeric golgi complex 1 |
| Gene Alias: | 6030445I15|Ldlb|mKIAA1381 |
| Gene Description: | component of oligomeric golgi complex 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.716418 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
