Difference between revisions of "TSS:Mm 99966.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000106621.3:-87 AK017508:-87 ENSMUST00000123466.1:-94 AK139389:-94 | + | |all_trans=ENSMUST00000106621.3:-87 AK017508:-87 ENSMUST00000123466.1:-94 AK139389:-94 NM_177777:-100 NM_001361593:-100 ENSMUST00000042227.14:-122 BC048942:-122 AK171307:-128 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
|distance=-87 | |distance=-87 | ||
| − | |distance_to_tss= | + | |distance_to_tss=108 |
|end=113684551 | |end=113684551 | ||
|end_of_center_position=113684543 | |end_of_center_position=113684543 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.616915 | |gc_percent=0.616915 | ||
|gene_alias=- | |gene_alias=- | ||
| − | |gene_description= | + | |gene_description=DNA segment, Chr 11, Wayne State University 47, expressed |
|gene_id=276852 | |gene_id=276852 | ||
| − | |gene_name= | + | |gene_name=DNA segment, Chr 11, Wayne State University 47, expressed |
|gene_source=MGI:106356 | |gene_source=MGI:106356 | ||
|gene_symbol=D11Wsu47e | |gene_symbol=D11Wsu47e | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=MGI:106356 | |hgnc_mgi_id=MGI:106356 | ||
|nearest_ensembl=ENSMUSG00000041623 | |nearest_ensembl=ENSMUSG00000041623 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001361593 |
|nearest_refseq=NM_177777 | |nearest_refseq=NM_177777 | ||
|nearest_unigene=Mm.239566 | |nearest_unigene=Mm.239566 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=mouse | |species=mouse | ||
|start=113684533 | |start=113684533 | ||
Revision as of 04:03, 22 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 113684542 |
|---|---|
| End of the center position in the TSS region: | 113684543 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENSMUST00000106621.3 AK017508 |
|---|---|
| Distance: | -87 |
| Num_trans: | 9 |
| All_trans: | ENSMUST00000106621.3:-87 AK017508:-87 ENSMUST00000123466.1:-94 AK139389:-94 NM_177777:-100 NM_001361593:-100 ENSMUST00000042227.14:-122 BC048942:-122 AK171307:-128 |
TATA-Box annotation
| Distance to TSS: | 108 |
|---|---|
| Nearest PromoterID: | NM_001361593 |
| Entrez ID: | 276852 |
| Nearest Unigene: | Mm.239566 |
| Nearest Refseq: | NM_177777 |
| Nearest Ensembl: | ENSMUSG00000041623 |
| Gene Name: | DNA segment, Chr 11, Wayne State University 47, expressed |
| Gene Alias: | - |
| Gene Description: | DNA segment, Chr 11, Wayne State University 47, expressed |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.616915 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
