Difference between revisions of "TSS:Mm 99975.1"
From referenceTSS
| Line 2: | Line 2: | ||
|5330435L01Rik= | |5330435L01Rik= | ||
|Sdk-2= | |Sdk-2= | ||
| − | |all_trans=ENSMUST00000129365.1:0 | + | |all_trans=ENSMUST00000129365.1:0 NR_166914:0 NR_166915:0 AK131679:25 AK006331:65 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-24380 |
|end=114091413 | |end=114091413 | ||
|end_of_center_position=114091409 | |end_of_center_position=114091409 | ||
|entrez_id=237979 | |entrez_id=237979 | ||
|gc_percent=0.447761 | |gc_percent=0.447761 | ||
| − | |gene_alias=4632412F08Rik | + | |gene_alias=4632412F08Rik{{!}}5330435L01Rik{{!}}Sdk-2{{!}}mKIAA1514 |
|gene_description=sidekick cell adhesion molecule 2 | |gene_description=sidekick cell adhesion molecule 2 | ||
| − | |gene_id= | + | |gene_id=100041739 |
|gene_name=RIKEN cDNA 1700025D23 gene | |gene_name=RIKEN cDNA 1700025D23 gene | ||
|gene_source=MGI:1916667 | |gene_source=MGI:1916667 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_172800 | |nearest_refseq=NM_172800 | ||
|nearest_unigene=Mm.130504 | |nearest_unigene=Mm.130504 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=mouse | |species=mouse | ||
|start=114091404 | |start=114091404 | ||
|start_of_center_position=114091408 | |start_of_center_position=114091408 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENSMUST00000129365.1 | + | |transcript_name=ENSMUST00000129365.1 NR_166914 NR_166915 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_99975.1 | |tss_id=mm_99975.1 | ||
Revision as of 04:03, 22 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 114091408 |
|---|---|
| End of the center position in the TSS region: | 114091409 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000129365.1 NR_166914 NR_166915 |
|---|---|
| Distance: | 0 |
| Num_trans: | 5 |
| All_trans: | ENSMUST00000129365.1:0 NR_166914:0 NR_166915:0 AK131679:25 AK006331:65 |
TATA-Box annotation
| Distance to TSS: | -24380 |
|---|---|
| Nearest PromoterID: | NM_172800 |
| Entrez ID: | 237979 |
| Nearest Unigene: | Mm.130504 |
| Nearest Refseq: | NM_172800 |
| Nearest Ensembl: | ENSMUSG00000041592 |
| Gene Name: | RIKEN cDNA 1700025D23 gene |
| Gene Alias: | 4632412F08Rik|5330435L01Rik|Sdk-2|mKIAA1514 |
| Gene Description: | sidekick cell adhesion molecule 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.447761 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
